Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Calcineurin subunit B type 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8138 g8138.t3 TSS g8138.t3 28753381 28753381
chr_2 g8138 g8138.t3 isoform g8138.t3 28753479 28754062
chr_2 g8138 g8138.t3 exon g8138.t3.exon1 28753479 28753823
chr_2 g8138 g8138.t3 cds g8138.t3.CDS1 28753479 28753823
chr_2 g8138 g8138.t3 exon g8138.t3.exon2 28753891 28754062
chr_2 g8138 g8138.t3 cds g8138.t3.CDS2 28753891 28753893
chr_2 g8138 g8138.t3 TTS g8138.t3 28754168 28754168

Sequences

>g8138.t3 Gene=g8138 Length=517
ATGGGTAATGAAATATCTTCTTCATTGATAGCAAAAAATTCAAAATTTACTCCTGAAGAA
TTAGAACGCTTGTCAAAAAAATTCAAAAAGTTGGATTTAGATAAATCAGGTTCAATAAGT
AGTGAAGAATTCATGTCGGTGCCTGAAATGAAATCTAATCCACTTGCACAACGAATCATT
ACTCTCTTTGACTCAAATGGTGATGGAGAAGTTGATTTTCGTGAGTTTATTGCAACTCTT
TCACTCTTTTCTGTGAAAAGTAATAAAGAGGAAAAACTCAAGTTTGCTTTTCGTATTTAT
GATGTGGATAATGATGGTCTGATTTCCTATAAAGATCTCGTAAATTAAAATGATGGTAGG
GAAAAATCTCACAGATTATCAAATCAATCAAATTTGTGCTAGAACAATGACGTTTTCGGA
TGTAGATGATGATGCTGGTGGAAAAATCTCATTTGAAGCGTTTAGCAAAGTTATTGAAGA
TATGAATATCCATAACAAAATGATTCTTGAATTTTAA

>g8138.t3 Gene=g8138 Length=115
MGNEISSSLIAKNSKFTPEELERLSKKFKKLDLDKSGSISSEEFMSVPEMKSNPLAQRII
TLFDSNGDGEVDFREFIATLSLFSVKSNKEEKLKFAFRIYDVDNDGLISYKDLVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g8138.t3 Gene3D G3DSA:1.10.238.10 - 13 113 3.7E-39
4 g8138.t3 PANTHER PTHR45942 PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 10 114 1.2E-42
3 g8138.t3 Pfam PF13202 EF hand 27 46 5.4E-6
2 g8138.t3 Pfam PF13202 EF hand 63 77 0.0032
1 g8138.t3 Pfam PF00036 EF hand 93 114 5.5E-6
11 g8138.t3 ProSitePatterns PS00018 EF-hand calcium-binding domain. 32 44 -
10 g8138.t3 ProSitePatterns PS00018 EF-hand calcium-binding domain. 64 76 -
9 g8138.t3 ProSitePatterns PS00018 EF-hand calcium-binding domain. 101 113 -
15 g8138.t3 ProSiteProfiles PS50222 EF-hand calcium-binding domain profile. 19 54 11.975
14 g8138.t3 ProSiteProfiles PS50222 EF-hand calcium-binding domain profile. 56 86 10.329
13 g8138.t3 ProSiteProfiles PS50222 EF-hand calcium-binding domain profile. 88 115 13.621
8 g8138.t3 SMART SM00054 efh_1 23 51 1.5
6 g8138.t3 SMART SM00054 efh_1 55 83 0.0019
7 g8138.t3 SMART SM00054 efh_1 92 115 22.0
5 g8138.t3 SUPERFAMILY SSF47473 EF-hand 11 114 1.85E-30

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed