General information for g8145.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenine phosphoribosyltransferase.
Parent gene
- The parent gene g8145 is located on chr_2: 28783540..28784242 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8145 | g8145.t7 | TSS | g8145.t7 | 28783191 | 28783191 |
| chr_2 | g8145 | g8145.t7 | isoform | g8145.t7 | 28783379 | 28784063 |
| chr_2 | g8145 | g8145.t7 | exon | g8145.t7.exon1 | 28783379 | 28783473 |
| chr_2 | g8145 | g8145.t7 | cds | g8145.t7.CDS1 | 28783379 | 28783473 |
| chr_2 | g8145 | g8145.t7 | exon | g8145.t7.exon2 | 28783545 | 28783661 |
| chr_2 | g8145 | g8145.t7 | cds | g8145.t7.CDS2 | 28783545 | 28783661 |
| chr_2 | g8145 | g8145.t7 | exon | g8145.t7.exon3 | 28783733 | 28784063 |
| chr_2 | g8145 | g8145.t7 | cds | g8145.t7.CDS3 | 28783733 | 28784063 |
| chr_2 | g8145 | g8145.t7 | TTS | g8145.t7 | 28784238 | 28784238 |
Sequences
>g8145.t7 Gene=g8145 Length=543
ATGTCATTTGACCAGATTGATTTGGAAAGATTAAATTTGTTAAAATCTAAAATTGGTGAA
TATCCCGACTTTCCTAAAAAAGGAATAAATTTTAAAGATATCTTCACAGCATTTCGTGAT
GGAAAAGTGTGTGCCGCCACAAAAAATCTGGTTCTTAATTATGTTAAGAAAAATCATCCT
AATATTGATGCAGTTGTAGGCTTGGATGCAAGCTTTCTAATCGCAGCTGAAATGGAAATT
GGATGTGTTCCGATAAGAAAAAAAGGAAAACTGCCAGGAAAGACTGAAAAAGTTGAATAT
AATTTAGAGTATGGAACTGATATTTTTGAAGTTCAGAGTGACAGCATAAAACCTGGTCAA
AAAGTTGTGATAATTGATGATCTCCTTGCAACAGGCGGCTCATTAAAAGCTGCCAATGAA
TTGATCAAAAAATGCGGTGGAATAGTGGAAGCAAATATCGTAATTTTAGAATTAAGATCA
ATTAATGGAAGAAAGAATCTTGATGTTCCTGTTTTTTCTTTCATTCAGTATGCTGATGAA
TGA
>g8145.t7 Gene=g8145 Length=180
MSFDQIDLERLNLLKSKIGEYPDFPKKGINFKDIFTAFRDGKVCAATKNLVLNYVKKNHP
NIDAVVGLDASFLIAAEMEIGCVPIRKKGKLPGKTEKVEYNLEYGTDIFEVQSDSIKPGQ
KVVIIDDLLATGGSLKAANELIKKCGGIVEANIVILELRSINGRKNLDVPVFSFIQYADE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8145.t7 | CDD | cd06223 | PRTases_typeI | 50 | 173 | 0.00000 |
| 5 | g8145.t7 | Gene3D | G3DSA:3.40.50.2020 | - | 9 | 180 | 0.00000 |
| 3 | g8145.t7 | Hamap | MF_00004 | Adenine phosphoribosyltransferase [apt]. | 14 | 177 | 27.02253 |
| 2 | g8145.t7 | PANTHER | PTHR32315 | ADENINE PHOSPHORIBOSYLTRANSFERASE | 10 | 177 | 0.00000 |
| 1 | g8145.t7 | Pfam | PF00156 | Phosphoribosyl transferase domain | 74 | 147 | 0.00000 |
| 4 | g8145.t7 | SUPERFAMILY | SSF53271 | PRTase-like | 16 | 170 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003999 | adenine phosphoribosyltransferase activity | MF |
| GO:0009116 | nucleoside metabolic process | BP |
| GO:0006168 | adenine salvage | BP |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
