General information for g8160.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Arrestin-like protein.
Parent gene
- The parent gene g8160 is located on chr_2: 28832300..28833590 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8160 | g8160.t1 | TTS | g8160.t1 | 28831340 | 28831340 |
| chr_2 | g8160 | g8160.t1 | isoform | g8160.t1 | 28831985 | 28833590 |
| chr_2 | g8160 | g8160.t1 | exon | g8160.t1.exon1 | 28831985 | 28832133 |
| chr_2 | g8160 | g8160.t1 | cds | g8160.t1.CDS1 | 28831985 | 28832133 |
| chr_2 | g8160 | g8160.t1 | exon | g8160.t1.exon2 | 28832194 | 28832241 |
| chr_2 | g8160 | g8160.t1 | cds | g8160.t1.CDS2 | 28832194 | 28832241 |
| chr_2 | g8160 | g8160.t1 | exon | g8160.t1.exon3 | 28832303 | 28832449 |
| chr_2 | g8160 | g8160.t1 | cds | g8160.t1.CDS3 | 28832303 | 28832449 |
| chr_2 | g8160 | g8160.t1 | exon | g8160.t1.exon4 | 28832735 | 28833590 |
| chr_2 | g8160 | g8160.t1 | cds | g8160.t1.CDS4 | 28832735 | 28833590 |
| chr_2 | g8160 | g8160.t1 | TSS | g8160.t1 | 28833799 | 28833799 |
Sequences
>g8160.t1 Gene=g8160 Length=1200
ATGGTTGTTGCAGTTAAAGTTTACAAAAAAACTACACCAAATGGCAAAATGACCGTTTAT
TTGGGCAAGCGTGACTTCATTGATCATGGCGATTATTGCGATCCTGTTGATGGAGTCGTT
GTGCTTGATGAAGAGTACATGCGTGGAAGAAAAGTCTTTGGGCAACTTGTAACGATTTAT
CGCTATGGACGCGAAGAAGACGAAGTAATGGGATTGAAATTCAGCAAGGAATTGGTCATT
GGAAAAGAGCAAGTGTATCCAATGGTTAATGCCAAGATGGAAATGACACCCATGCAAGAA
CGTCTCATTAAAAAACTTGGCGCTAATGCTTTTCCAGTTACATTCCATTTTCCTCAATCT
TCACCAAGCTCTGTCACACTTCAACCTGGTGAAGATGATCAGGGAAAGCCTTTGGGAGTT
GAATACTATATTAAAGTATTTGTTGGTGACAATGAAGATGATAAGAGTCACAAGCGTAGC
AGCATCAGTCTTACAATCAAAAAGTTGCAATATGCTCCACCAACTCGTGGCAAACGATTG
CCTTCGTCTTTAGTCAGTAAGGGATTTACATTCTCTCAGGGCAAAATCAATTTGGAAGTT
ACACTAGATCGCGAAACATATTATCATGGCGAGAAAATTTCTGCAAATCTTGTTGTAACT
AATAACTCTCGAAAGACTGTTAAGAGCATTAAAGTGTTTGTTGTGCAGCACTGTGAAGTC
ACTATGGTCAATGCACAGTTTAGCAAACATGTGGCCAGTCTTGAAACTCGTGAAGGTTGC
CCAATCACACCTGGTGCAAGTTTTACAAAAACATTCTTCTTAGTGCCATTGGCTAGCTCT
AATAAGGATCGTCGTGGAATTGCGCTTGATGGTCATTTGAGAGAAGATGATGTTAACCTT
GCATCATCAACCTTGGGTGCTGAGGGCAAAACATCAGCTGAATCAATGGGTATTGTTATT
TCATACTCATTAAGGGTAAAGCTCAACTGTGGAACATTGGGCGGTGAACTTCAAACAGAC
GTTCCATTTAAATTATTGAATCCAGCACCTGGCACTGTCGAGCGTGAGCGTGTAAATGCC
ATGAAGAAAATGAAATCGATCGAAAGACATCGTTATGAAAATAGCAATTATGATGATGAA
GATGATTCGAATATTGTTTTTGAAGACTTTGCAAGAATGAGAATGAATGAACCTGAATAA
>g8160.t1 Gene=g8160 Length=399
MVVAVKVYKKTTPNGKMTVYLGKRDFIDHGDYCDPVDGVVVLDEEYMRGRKVFGQLVTIY
RYGREEDEVMGLKFSKELVIGKEQVYPMVNAKMEMTPMQERLIKKLGANAFPVTFHFPQS
SPSSVTLQPGEDDQGKPLGVEYYIKVFVGDNEDDKSHKRSSISLTIKKLQYAPPTRGKRL
PSSLVSKGFTFSQGKINLEVTLDRETYYHGEKISANLVVTNNSRKTVKSIKVFVVQHCEV
TMVNAQFSKHVASLETREGCPITPGASFTKTFFLVPLASSNKDRRGIALDGHLREDDVNL
ASSTLGAEGKTSAESMGIVISYSLRVKLNCGTLGGELQTDVPFKLLNPAPGTVERERVNA
MKKMKSIERHRYENSNYDDEDDSNIVFEDFARMRMNEPE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g8160.t1 | Gene3D | G3DSA:2.60.40.840 | - | 3 | 174 | 8.0E-74 |
| 15 | g8160.t1 | Gene3D | G3DSA:2.60.40.640 | - | 178 | 360 | 1.5E-56 |
| 3 | g8160.t1 | PANTHER | PTHR11792:SF23 | PHOSRESTIN-1 | 1 | 398 | 9.7E-213 |
| 4 | g8160.t1 | PANTHER | PTHR11792 | ARRESTIN | 1 | 398 | 9.7E-213 |
| 5 | g8160.t1 | PRINTS | PR00309 | Arrestin signature | 23 | 45 | 8.2E-40 |
| 7 | g8160.t1 | PRINTS | PR00309 | Arrestin signature | 60 | 78 | 8.2E-40 |
| 8 | g8160.t1 | PRINTS | PR00309 | Arrestin signature | 153 | 170 | 8.2E-40 |
| 9 | g8160.t1 | PRINTS | PR00309 | Arrestin signature | 280 | 298 | 8.2E-40 |
| 6 | g8160.t1 | PRINTS | PR00309 | Arrestin signature | 382 | 396 | 8.2E-40 |
| 1 | g8160.t1 | Pfam | PF00339 | Arrestin (or S-antigen), N-terminal domain | 18 | 171 | 1.3E-27 |
| 2 | g8160.t1 | Pfam | PF02752 | Arrestin (or S-antigen), C-terminal domain | 193 | 348 | 3.3E-22 |
| 13 | g8160.t1 | ProSitePatterns | PS00295 | Arrestins signature. | 60 | 78 | - |
| 12 | g8160.t1 | SMART | SM01017 | Arrestin_C_2 | 192 | 350 | 9.0E-23 |
| 11 | g8160.t1 | SUPERFAMILY | SSF81296 | E set domains | 5 | 173 | 3.39E-71 |
| 10 | g8160.t1 | SUPERFAMILY | SSF81296 | E set domains | 181 | 392 | 3.17E-45 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
KEGG
Orthology
- This transcript has been annotated with K13805 (arrestin-2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed