Gene loci information

Transcript annotation

  • This transcript has been annotated as Arrestin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8160 g8160.t2 TTS g8160.t2 28831340 28831340
chr_2 g8160 g8160.t2 isoform g8160.t2 28832300 28833590
chr_2 g8160 g8160.t2 exon g8160.t2.exon1 28832300 28832449
chr_2 g8160 g8160.t2 cds g8160.t2.CDS1 28832301 28832449
chr_2 g8160 g8160.t2 exon g8160.t2.exon2 28832735 28833590
chr_2 g8160 g8160.t2 cds g8160.t2.CDS2 28832735 28833590
chr_2 g8160 g8160.t2 TSS g8160.t2 28833799 28833799

Sequences

>g8160.t2 Gene=g8160 Length=1006
ATGGTTGTTGCAGTTAAAGTTTACAAAAAAACTACACCAAATGGCAAAATGACCGTTTAT
TTGGGCAAGCGTGACTTCATTGATCATGGCGATTATTGCGATCCTGTTGATGGAGTCGTT
GTGCTTGATGAAGAGTACATGCGTGGAAGAAAAGTCTTTGGGCAACTTGTAACGATTTAT
CGCTATGGACGCGAAGAAGACGAAGTAATGGGATTGAAATTCAGCAAGGAATTGGTCATT
GGAAAAGAGCAAGTGTATCCAATGGTTAATGCCAAGATGGAAATGACACCCATGCAAGAA
CGTCTCATTAAAAAACTTGGCGCTAATGCTTTTCCAGTTACATTCCATTTTCCTCAATCT
TCACCAAGCTCTGTCACACTTCAACCTGGTGAAGATGATCAGGGAAAGCCTTTGGGAGTT
GAATACTATATTAAAGTATTTGTTGGTGACAATGAAGATGATAAGAGTCACAAGCGTAGC
AGCATCAGTCTTACAATCAAAAAGTTGCAATATGCTCCACCAACTCGTGGCAAACGATTG
CCTTCGTCTTTAGTCAGTAAGGGATTTACATTCTCTCAGGGCAAAATCAATTTGGAAGTT
ACACTAGATCGCGAAACATATTATCATGGCGAGAAAATTTCTGCAAATCTTGTTGTAACT
AATAACTCTCGAAAGACTGTTAAGAGCATTAAAGTGTTTGTTGTGCAGCACTGTGAAGTC
ACTATGGTCAATGCACAGTTTAGCAAACATGTGGCCAGTCTTGAAACTCGTGAAGGTTGC
CCAATCACACCTGGTGCAAGTTTTACAAAAACATTCTTCTTAGTGCCATTGGCTAGCTCT
AATAAGGATCGTCGTGGAATTGCGCTTGATGGTCATTTGAGAGAAGATGATGTTAACCTT
GCATCATCAACCTTGGGTGCTGAGGGCAAAACATCAGCTGAATCAATGGGTATTGTTATT
TCATACTCATTAAGGGTAAAGCTCAACTGTGGAACATTGGGCGGTG

>g8160.t2 Gene=g8160 Length=335
MVVAVKVYKKTTPNGKMTVYLGKRDFIDHGDYCDPVDGVVVLDEEYMRGRKVFGQLVTIY
RYGREEDEVMGLKFSKELVIGKEQVYPMVNAKMEMTPMQERLIKKLGANAFPVTFHFPQS
SPSSVTLQPGEDDQGKPLGVEYYIKVFVGDNEDDKSHKRSSISLTIKKLQYAPPTRGKRL
PSSLVSKGFTFSQGKINLEVTLDRETYYHGEKISANLVVTNNSRKTVKSIKVFVVQHCEV
TMVNAQFSKHVASLETREGCPITPGASFTKTFFLVPLASSNKDRRGIALDGHLREDDVNL
ASSTLGAEGKTSAESMGIVISYSLRVKLNCGTLGG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g8160.t2 Gene3D G3DSA:2.60.40.840 - 3 174 5.2E-74
14 g8160.t2 Gene3D G3DSA:2.60.40.640 - 178 335 6.3E-52
3 g8160.t2 PANTHER PTHR11792:SF23 PHOSRESTIN-1 1 335 1.6E-183
4 g8160.t2 PANTHER PTHR11792 ARRESTIN 1 335 1.6E-183
5 g8160.t2 PRINTS PR00309 Arrestin signature 23 45 6.8E-33
6 g8160.t2 PRINTS PR00309 Arrestin signature 60 78 6.8E-33
7 g8160.t2 PRINTS PR00309 Arrestin signature 153 170 6.8E-33
8 g8160.t2 PRINTS PR00309 Arrestin signature 280 298 6.8E-33
1 g8160.t2 Pfam PF00339 Arrestin (or S-antigen), N-terminal domain 18 171 8.6E-28
2 g8160.t2 Pfam PF02752 Arrestin (or S-antigen), C-terminal domain 193 331 8.9E-19
12 g8160.t2 ProSitePatterns PS00295 Arrestins signature. 60 78 -
11 g8160.t2 SMART SM01017 Arrestin_C_2 192 335 1.0E-14
10 g8160.t2 SUPERFAMILY SSF81296 E set domains 5 173 2.24E-71
9 g8160.t2 SUPERFAMILY SSF81296 E set domains 181 332 7.0E-39

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed