General information for g8161.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peroxisomal targeting signal 2 receptor.
Parent gene
- The parent gene g8161 is located on chr_2: 28834215..28835248 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8161 | g8161.t1 | isoform | g8161.t1 | 28834215 | 28835248 |
| chr_2 | g8161 | g8161.t1 | exon | g8161.t1.exon1 | 28834215 | 28835020 |
| chr_2 | g8161 | g8161.t1 | cds | g8161.t1.CDS1 | 28834215 | 28835020 |
| chr_2 | g8161 | g8161.t1 | exon | g8161.t1.exon2 | 28835086 | 28835248 |
| chr_2 | g8161 | g8161.t1 | cds | g8161.t1.CDS2 | 28835086 | 28835248 |
| chr_2 | g8161 | g8161.t1 | TSS | g8161.t1 | NA | NA |
| chr_2 | g8161 | g8161.t1 | TTS | g8161.t1 | NA | NA |
Sequences
>g8161.t1 Gene=g8161 Length=969
ATGCCAACTTATTTTACAGCAAATCGACATGGATATGCTGTGAAGTTTTCACGCTTTTCA
TCGGACAGAATTTTCGTAGCATCATCACAATTTTATGGTTTGGCAGGGGCAGGAACACTT
TATGTTTTGGATCTTGTAGATGATGATAATTTCAAAGAAGTCAAATCATTTCAATGGAGT
GATGGTCTCTTTGATTTAGTCACATCAGAAAAAGATCCTAACATTGTGATTTCAGTGTCT
GGCGATAGTACAATGCAGTTGTGGAATTTGGATTCAATTGATGAAAATTCACCTCTCACA
AATTTACCACAAATGATTTATAAAGAGCATAAAAAGGAAATTTACAGTATTGATTGGTTA
AGCGTGAGAAGTGAAAATTTCATTTTAAGTGCTAGTTGGGATTTGAGTATAAAATTATGG
GATCCAAATTACACAACTTCTCTTTGTACATATAATGGGCACTCGAAAATTGTTTATAAT
GCAATATTTTCACCTCTCATTCCTAATACTTTTGCATCTTGCTCTGCAGATGGTTACTTA
AAAATATGGAATTTATTTAATAAAGATAAACCTATTGCTAGCTTAAAATCTCACGAAGGC
GAGATTTTAACTATTGATTTTTGTAAATTTGATCAAAATATTTTAGCTACAGGTGCAAGC
GACGGACTAATTAGAGGATATGATATAAGATTTTTTGGTATGCCAATGTTTGAGCTGAAA
GGTTGTGACTATGCTGTTAGAAAAATCCAATTTTCACCATTTGAGATTAGTACTATTGCA
TCAGTTGGATATGATTGTTATACGAGAATATGGGATTTTAATCGAACAAATGAGAGCATA
GAGTCAATAAAAAATCACACAGATTTTGCATATGGTGTAGATTGGAGTAAATCAAAAAGA
AATCTGATAGCAGATTGCGGATGGGATTCTTTAGTGCATGTGTTTAGCCCAAAATCATTA
GAAAATTAA
>g8161.t1 Gene=g8161 Length=322
MPTYFTANRHGYAVKFSRFSSDRIFVASSQFYGLAGAGTLYVLDLVDDDNFKEVKSFQWS
DGLFDLVTSEKDPNIVISVSGDSTMQLWNLDSIDENSPLTNLPQMIYKEHKKEIYSIDWL
SVRSENFILSASWDLSIKLWDPNYTTSLCTYNGHSKIVYNAIFSPLIPNTFASCSADGYL
KIWNLFNKDKPIASLKSHEGEILTIDFCKFDQNILATGASDGLIRGYDIRFFGMPMFELK
GCDYAVRKIQFSPFEISTIASVGYDCYTRIWDFNRTNESIESIKNHTDFAYGVDWSKSKR
NLIADCGWDSLVHVFSPKSLEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8161.t1 | Gene3D | G3DSA:2.130.10.10 | - | 2 | 316 | 3.0E-71 |
| 3 | g8161.t1 | PANTHER | PTHR46027 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR | 1 | 319 | 1.2E-105 |
| 4 | g8161.t1 | PANTHER | PTHR46027:SF1 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR | 1 | 319 | 1.2E-105 |
| 6 | g8161.t1 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 76 | 90 | 1.0E-5 |
| 5 | g8161.t1 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 128 | 142 | 1.0E-5 |
| 7 | g8161.t1 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 1.0E-5 |
| 2 | g8161.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 103 | 141 | 0.0038 |
| 1 | g8161.t1 | Pfam | PF00400 | WD domain, G-beta repeat | 148 | 184 | 0.011 |
| 10 | g8161.t1 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 76 | 90 | - |
| 11 | g8161.t1 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 259 | 273 | - |
| 18 | g8161.t1 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 322 | 29.477 |
| 19 | g8161.t1 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 107 | 141 | 9.907 |
| 20 | g8161.t1 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 185 | 10.776 |
| 15 | g8161.t1 | SMART | SM00320 | WD40_4 | 50 | 89 | 0.65 |
| 12 | g8161.t1 | SMART | SM00320 | WD40_4 | 100 | 141 | 3.0E-5 |
| 17 | g8161.t1 | SMART | SM00320 | WD40_4 | 144 | 184 | 3.8E-5 |
| 14 | g8161.t1 | SMART | SM00320 | WD40_4 | 188 | 228 | 1.6E-5 |
| 16 | g8161.t1 | SMART | SM00320 | WD40_4 | 232 | 272 | 0.084 |
| 13 | g8161.t1 | SMART | SM00320 | WD40_4 | 276 | 316 | 0.13 |
| 8 | g8161.t1 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 318 | 4.43E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K13341 (peroxin-7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed