General information for g817.t43
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g817 is located on chr_3: 6162517..6163196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g817 | g817.t43 | TTS | g817.t43 | 6162068 | 6162068 |
| chr_3 | g817 | g817.t43 | isoform | g817.t43 | 6162517 | 6163196 |
| chr_3 | g817 | g817.t43 | exon | g817.t43.exon1 | 6162517 | 6163196 |
| chr_3 | g817 | g817.t43 | cds | g817.t43.CDS1 | 6162518 | 6163003 |
| chr_3 | g817 | g817.t43 | TSS | g817.t43 | NA | NA |
Sequences
>g817.t43 Gene=g817 Length=680
TCAATTATTACACCATTAAATTATTAATAATGCTTCTTAATATCTTACTTTTTAATTTTA
TAATTCAATTTTGAATAATTAAAGAGAAATTCTATAAAAATAATTCATCATCAGAATTTC
CTACACGTAAATAAACAAAAGACATAATTTAATTTTTATTTGCTTTCAATATATGTTTAG
ACTTTTTCTCAGAATGCCTTTCTATGCAGTAGCAAAAGGCAAGGAAACTGGGATATATAG
CACTTGGGATGACTGTCAGCTGCAAGTGAAAGGTTTCAGTGGTGCAATTTATAAGAAATT
TAAAACAAAAGCAGAAGCTGAAGAATTTATCGAAAAGAAATCTGAACCAGTAAAAAAGAA
ACGCAAAATAGAATACACCGAAGAGGATGAGATTCGTGACATATTAAAATTCGTAGAAAC
GTGTGAAGATGAAGAAATTCCAACATCATCAACAAATAAATCGACAAACAAGGATTACAG
TAAACCCAAAATAAAAAGTGAACTTCCAGGAGAGACTACTCTAAAGAAATATGGCAAATA
TATATTTAATGAAGATGCTAATGGCTTTGTTCATGTGTTTACAGATGGGTATGATGAAAA
AAACTTTATTAAAATGCTTATCTTATCTAATTCTTTTTACATTTTAGTTCGTGTGAAAGT
AATGGATCAAAGTTTGCACG
>g817.t43 Gene=g817 Length=162
MPFYAVAKGKETGIYSTWDDCQLQVKGFSGAIYKKFKTKAEAEEFIEKKSEPVKKKRKIE
YTEEDEIRDILKFVETCEDEEIPTSSTNKSTNKDYSKPKIKSELPGETTLKKYGKYIFNE
DANGFVHVFTDGYDEKNFIKMLILSNSFYILVRVKVMDQSLH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g817.t43 | Gene3D | G3DSA:3.40.970.10 | Ribonuclease Hi; Chain A | 1 | 51 | 2.0E-24 |
| 5 | g817.t43 | MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 98 | - |
| 2 | g817.t43 | PANTHER | PTHR10642 | RIBONUCLEASE H1 | 1 | 137 | 2.9E-14 |
| 3 | g817.t43 | PANTHER | PTHR10642:SF23 | RIBONUCLEASE H1 | 1 | 137 | 2.9E-14 |
| 1 | g817.t43 | Pfam | PF01693 | Caulimovirus viroplasmin | 3 | 45 | 1.2E-22 |
| 4 | g817.t43 | SUPERFAMILY | SSF55658 | L9 N-domain-like | 2 | 46 | 4.29E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
