Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8177 g8177.t2 TTS g8177.t2 28927069 28927069
chr_2 g8177 g8177.t2 isoform g8177.t2 28927137 28928716
chr_2 g8177 g8177.t2 exon g8177.t2.exon1 28927137 28927474
chr_2 g8177 g8177.t2 cds g8177.t2.CDS1 28927137 28927454
chr_2 g8177 g8177.t2 exon g8177.t2.exon2 28927983 28928716
chr_2 g8177 g8177.t2 TSS g8177.t2 28928843 28928843

Sequences

>g8177.t2 Gene=g8177 Length=1072
ATGAAGGGTGAAGATTTAAGTGATATACATATACCAGAAAATATAATTTATCGTAATAAT
AGTAATCAAAAACCAATTAAAAGTTCATTTTTAATTGAGTCATTATTATCAAATAATAAT
GCTAAGCAAAAAGATGATTTAATGAAAAAAGATCAAGATAATTGTGGAAGGTAAAAAATT
AAAAATTAGAGTTTAAAATTTTTCATCATATTGTTCTCCTGTATAGTGATTCAAATTCGT
GCAACTCGTCAATATGTTCAAGAAGTCCATCAATTAGTCCTGGATGTGAAAATTCAGAGA
GTAGTGGCATAAGACATTTTGCAGATATGACACAACTTCCAATTTCTTCACACCCACTTA
TGAGTTTTCATTCGCATTATCCAAATTTAGAAATGTTTTATCATCCACGACAATTTTATT
ACGACAACTTTGACTTCAATAGTGAGTGAATTAAAAATTTCAATACTAAGAATTTTATTA
ATTTTTTTATGAAATATAAGGGCATCCAGGATTATTTGGAAAAACTCGTAGACCACGTAC
TGCATTTACGGTTAGTAAATTAACTAAACTGCAAAGAACTAATTGTGTGTAATTAAAAAA
TAAAAATCTATTTACAGTCACAACAACTTTTGGAACTCGAAAAGCAATTTAAACAGAATA
AATATCTATCACGTCCTAAACGATATGAAGTTGCAAGCAATCTACTACTGACAGAAACTC
AGGTTAGAAAAAAATATAAAAATTACATCAAATCATGAATTTTTCAGTAAATAAATTTAA
AACATTTTACTCTATTGTTAATAATCGATTCATTTATTATTTACTTATTCTATCTGTACA
TAAATACACACAGGTGAAGATTTGGTTTCAAAATCGAAGAATGAAGTTTAAACGATCAAG
GAGAACACAAAAAGAGCATGCCACTGCCGATAAAGAACGAAAGAATTCAATAAACAGTCA
AAAAACACAGGATGATCTCAAGTCATCAAAAAATGATCTCAACAATAAATCACTACCTTT
CCAACATTCACATCCTCACACTTATGATTCATATGTTCCTAGTTTAGCATAG

>g8177.t2 Gene=g8177 Length=105
MNFSVNKFKTFYSIVNNRFIYYLLILSVHKYTQVKIWFQNRRMKFKRSRRTQKEHATADK
ERKNSINSQKTQDDLKSSKNDLNNKSLPFQHSHPHTYDSYVPSLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8177.t2 CDD cd00086 homeodomain 32 49 1.04698E-4
6 g8177.t2 Gene3D G3DSA:1.10.10.60 - 26 48 6.9E-8
5 g8177.t2 MobiDBLite mobidb-lite consensus disorder prediction 46 105 -
3 g8177.t2 MobiDBLite mobidb-lite consensus disorder prediction 52 80 -
4 g8177.t2 MobiDBLite mobidb-lite consensus disorder prediction 81 97 -
1 g8177.t2 Pfam PF00046 Homeodomain 31 47 4.2E-5
9 g8177.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
10 g8177.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 38 -
8 g8177.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 39 105 -
7 g8177.t2 ProSiteProfiles PS50071 ‘Homeobox’ domain profile. 32 48 9.799
2 g8177.t2 SUPERFAMILY SSF46689 Homeodomain-like 30 52 5.99E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed