Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative dual specificity tyrosine-phosphorylation-regulated kinase 3-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8179 g8179.t2 TSS g8179.t2 28938568 28938568
chr_2 g8179 g8179.t2 isoform g8179.t2 28939561 28940438
chr_2 g8179 g8179.t2 exon g8179.t2.exon1 28939561 28940211
chr_2 g8179 g8179.t2 cds g8179.t2.CDS1 28939576 28940211
chr_2 g8179 g8179.t2 exon g8179.t2.exon2 28940269 28940438
chr_2 g8179 g8179.t2 cds g8179.t2.CDS2 28940269 28940436
chr_2 g8179 g8179.t2 TTS g8179.t2 NA NA

Sequences

>g8179.t2 Gene=g8179 Length=821
AAATTTCAATTTGATATGCCACAAGCACAACCTCAAATGATGAAAGCTGCTAGCAGTGCT
CTTATGCTCGCTAGTGGTAGTGGCCCTTCTTCCTCCTTCTCATCTTCTACAGTAGCAGCA
GCAGCATCAACAGTAGTACAGCAGGATGAACAACAACATCAAATGCAGATGTTTTGTAGT
CGTAAAAATTCGCTACCACATAGTAGTTTAATTAACAATAATCATACGAGTGGTAGTAGC
AACAATGACTTAAATGTAAATGGTGCAAATAAGAGTAATGTAAAACTTTCTGTAACAGCT
GCTTCAAATCATCATCAAAATGGAAATAATCAACCTCAGCAGCAACAACAAAACACCGAT
GCACAGCAGCAGCAGCAACAACAACAGCAAGTGATTTCAAGTAAATCACAAGCAATGAAG
TGTCCTGTTGTAGCATCTCCACAGCAAGTTATGATGTTATATATGAACAAACTGACACCA
TATGAGCATCACGAAATTTACAAATACTCACATATATATTTCATTGGTGCTAATGCTAAA
AAGCGCTCAGGAACGGGTCCGAATGATTTTGATAATGAAAATGGTTCTTATATACATGTA
CCACACGATCATATTGCATATCGTTATGAAGTTCTCAAAATAATTGGCAAGGGAAGCTTT
GGACAAGTATTAAAAGTTTGGTGTCACAAAACTCGTGAACATGTTGCATTAAAAATGGTA
CGAAATGAAAAGAGATTTCATCGACAGGCGCAAGAAGAAATTCGCATTTTAAAGCATTTA
CGTGCACAAGATAAGGAAAATACTTTCAATATAATTCACAT

>g8179.t2 Gene=g8179 Length=268
MPQAQPQMMKAASSALMLASGSGPSSSFSSSTVAAAASTVVQQDEQQHQMQMFCSRKNSL
PHSSLINNNHTSGSSNNDLNVNGANKSNVKLSVTAASNHHQNGNNQPQQQQQNTDAQQQQ
QQQQQVISSKSQAMKCPVVASPQQVMMLYMNKLTPYEHHEIYKYSHIYFIGANAKKRSGT
GPNDFDNENGSYIHVPHDHIAYRYEVLKIIGKGSFGQVLKVWCHKTREHVALKMVRNEKR
FHRQAQEEIRILKHLRAQDKENTFNIIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8179.t2 Coils Coil Coil 242 262 -
7 g8179.t2 Gene3D G3DSA:1.10.8.980 - 37 180 1.6E-15
6 g8179.t2 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 181 268 1.7E-30
16 g8179.t2 MobiDBLite mobidb-lite consensus disorder prediction 98 133 -
2 g8179.t2 PANTHER PTHR24058 DUAL SPECIFICITY PROTEIN KINASE 57 268 2.4E-69
3 g8179.t2 PANTHER PTHR24058:SF112 DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE 3 HOMOLOG-RELATED 57 268 2.4E-69
1 g8179.t2 Pfam PF00069 Protein kinase domain 204 257 2.5E-8
10 g8179.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 36 -
11 g8179.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 10 -
12 g8179.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 11 18 -
13 g8179.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 19 36 -
9 g8179.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 37 268 -
15 g8179.t2 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 210 233 -
17 g8179.t2 ProSiteProfiles PS50011 Protein kinase domain profile. 204 268 11.651
4 g8179.t2 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 192 263 9.14E-15
14 g8179.t2 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 27 -
5 g8179.t2 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 36 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values