General information for g818.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g818 is located on chr_3: 6164337..6174353 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g818 | g818.t16 | TSS | g818.t16 | 6163279 | 6163279 |
| chr_3 | g818 | g818.t16 | isoform | g818.t16 | 6163399 | 6165060 |
| chr_3 | g818 | g818.t16 | exon | g818.t16.exon1 | 6163399 | 6163418 |
| chr_3 | g818 | g818.t16 | exon | g818.t16.exon2 | 6163538 | 6163582 |
| chr_3 | g818 | g818.t16 | exon | g818.t16.exon3 | 6163669 | 6163883 |
| chr_3 | g818 | g818.t16 | exon | g818.t16.exon4 | 6163984 | 6165060 |
| chr_3 | g818 | g818.t16 | cds | g818.t16.CDS1 | 6164289 | 6164603 |
| chr_3 | g818 | g818.t16 | TTS | g818.t16 | 6165054 | 6165054 |
Sequences
>g818.t16 Gene=g818 Length=1357
ATGTCGCGCGACAATCATTTACAAAGATCGAGAAGCCGCTCACTTTCCAGATACCGCAAT
TACAACAGTACCTCGAAATCACAACGAACAACCACACCACCGCAATTTTCATCATCATCG
TCCTACAGATATAATTCTCGCCATGAGTCACCACCATCAAAGCGATCGAGATATCAAAAG
GAACGCAGTCGTTCGTTTGAAAAGAATGGAAGCAGCGGTGGACGAACCAGAAGACGCAAT
TCACCAGCGACAACCGATATAAGTCGTAAAAATCATGTAAGAGCCCTCTAGAGTTTTGGG
CGTCTTTAATTTGCATGTTCGCACGACTGAGGATGAAATTCGTGAAGTTTTCGAACGTTT
TGGAGAAATTGACAATATTGTTATGGTAAAAGATGCAAAAACAAGAGGATTTCGAGGCTA
TTGCTTTTTGTATTACAATAAGCAACGAGATGCAACAGCTGCCTTAGAGGAATGCAATGG
TATAGAGATCAAAGATCGGCAAATTCGCGTAGATTATTCATTAAGTGAAGGTCCTCATGT
GAGCACTCCAGGTATATTATTAGTTATTGATTTATTGAAAAAAAAATGTCATTTTCATTC
ATATTTGATGTTTTACAATTTTCATTTATGCAAGCAGGAGAATATCGAGGAAAACGGGGA
AGAGATAATATGCGCGGCCAAAGACCACGTCATTTAAGTCCATTGCGTGGAGAGAGAACT
CGTTATTACGATAGATATGACAATGTTCGAACTCGCTCGCGTGATAGAGACAGATATGAC
AACGATCGTTTTAGACGTTCACCGCCTCGTAATTATGATAGATCTGATTATCATCGTCGT
GGATCACCTGATCGCTTTGATCGCCGAAGATCCCCACCAATGCGTGAACGCAGGCACTAA
ATATTTGACTAAAACATGTGTTGATTGAATTTGATGAAGCAAGAGAAGAAACATTTTAAC
TTACTACACACATACAATGAAGATAAAATATATATATCATTTTGCAAAAAAAGCAATTAA
TTTTAACACGGTTTTTTTGCTATTAATATTACTACTGATAAAATCAAATGACCAAAATTT
TGTTTATTACAACTATATTTGTTTCGATGCTCATTTCTAATTATGCTGAAAATCTATTAA
AAACTTAAATGTTTGAAATTATAAAAAAATTCTAACAATGAATTATTGAATTTTTAAAAA
ATTTGTAACCACACACCAATTAGAATATTTCGAATTAATCATGTCCTTCTTTCAATTATT
TTCTTTATTTTCTCTCACATATTAGTGTGTTCAAAATTCTAATTTTTTCAATGTAAGAAG
ATGACGATTTTTATTAATAAAAAATCAAAACTAAAAA
>g818.t16 Gene=g818 Length=104
MSFSFIFDVLQFSFMQAGEYRGKRGRDNMRGQRPRHLSPLRGERTRYYDRYDNVRTRSRD
RDRYDNDRFRRSPPRNYDRSDYHRRGSPDRFDRRRSPPMRERRH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g818.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 104 | - |
| g818.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 96 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
