Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8184 g8184.t10 TSS g8184.t10 28959387 28959387
chr_2 g8184 g8184.t10 isoform g8184.t10 28960177 28963602
chr_2 g8184 g8184.t10 exon g8184.t10.exon1 28960177 28960601
chr_2 g8184 g8184.t10 cds g8184.t10.CDS1 28960328 28960601
chr_2 g8184 g8184.t10 exon g8184.t10.exon2 28961822 28962240
chr_2 g8184 g8184.t10 cds g8184.t10.CDS2 28961822 28961850
chr_2 g8184 g8184.t10 exon g8184.t10.exon3 28962298 28962699
chr_2 g8184 g8184.t10 exon g8184.t10.exon4 28962757 28962955
chr_2 g8184 g8184.t10 exon g8184.t10.exon5 28963539 28963602
chr_2 g8184 g8184.t10 TTS g8184.t10 NA NA

Sequences

>g8184.t10 Gene=g8184 Length=1509
ATTAGCGGAAAGAATCAGAGCTGGTGGAGCAGGTATTCCTGCATTTTTCACACCTACTGG
TACTTTTACATTGATTCATGAAGGGGGAAGTCCTATTAAATATGTTAAGGGTAAAAATAA
GGAAGTTGAGATTGCAAGTGCAAAAAGAGAAATGAGAGAATTTAATGGAAAACCTTATAT
CATGGAGGAAGCAATTACTGGCGACTTTGCATTAATTCGTGCTTATAAGGCAGATGAACT
TGGAAATTTGATATTTAGAAAATCAGCTAGAAATTTTAATCCACCTATGGCAAAAGCAGC
TAAAATTACAATTGCAGAAGTTGAAGAAATTGTTCCAATTGGTGCACTTCAACCTGATGA
AATTCATCTACCTGGTATTTTTGTGCATCGCATTATTCGCGGAAAATTTGAAAAGAGAAT
TGAAAGAATAAAAAATATACAATTTTTACGATAACATATTTTAAAAGACTAAAATAAAAA
TAAAATATTTCTTGTTGGCGTGTTTTCTTTTCTCTTGCATATATAGAAGTGACCCTTATC
TGCCGTGCCTAGCTCACACAGAAACTTAAGATTGATAAATTAGAATTGATATAGATGATA
GACCAAAGAAATGGTGACACACACACATATGTATTCAACTTACTTATCAATTAATAGCGA
TAAATAAGTGAAAAAAAAACTTATTTTCTTGACATCAATCTATAGCTGTACTATAAAATT
AATTAGAGATATATAAGAATAGATTTTTAAACAAAAAAAATTTGGTTTCAAATTCCTATT
TCTATTAAATTAGTACATTGTAGACTTTTATGCATATTGTCTTCTGTTTGCATTTCGAAT
TGAAATATAACTTACGACAACAGGCGAAGATTACACCAACAAGTTCAATACCAGCAAAGA
CAATTGCAAACCATGCAATCAAGAGTCCACTATCATTGACAAAGTTGGAAAGAAGTGTAG
CACATCCATCTGAATGAGCGTTCGACACTGTGCATGCTATAACTCCATCATCACAGCATG
AAGATGGAATATTTAATAATCCCCAATCAGCGGGTCCAGCTGAACCACAACAGCGAAGTC
CGCGTTGTATGCCTTCGATAGCAATTCTTGTTTCATTATTTGTGTCTCTGTTTTCCCATA
ATTTATTGAAACCATTTTCTGCAGCTTTCGCAAGTTCACCTGTATACATAAATGCGAAAA
CGGCGATAACAATTTGAAGAACGACCAATATGAGTAGGAAAAATGCGTACCGTTGAAACC
ATACACTGATTTTCTCTAATAGCTCCACAACATCCAAAGAAACTGATGATAAAGATTATC
GAGCCAAGAACGACGATTATGATGGGAACAGTGGCTGGATTGTTTTCAGGAAAGGCATCT
CGAATGTCATCAAGTTTGAATAGTGGAATTGCACCAACAACGATCAATGCTATACCAGCA
ACCTGCACAAAGAAGGTTGAAAATAAAAATGCCATATTTGACCACAGATGCTCCACAAGT
TAAACCCAT

>g8184.t10 Gene=g8184 Length=100
MREFNGKPYIMEEAITGDFALIRAYKADELGNLIFRKSARNFNPPMAKAAKITIAEVEEI
VPIGALQPDEIHLPGIFVHRIIRGKFEKRIERIKNIQFLR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g8184.t10 Gene3D G3DSA:3.40.1080.10 - 1 84 0
2 g8184.t10 PANTHER PTHR13707 KETOACID-COENZYME A TRANSFERASE 2 94 0
1 g8184.t10 Pfam PF01144 Coenzyme A transferase 2 83 0
3 g8184.t10 SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like 2 90 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008410 CoA-transferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed