General information for g8184.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial.
Parent gene
- The parent gene g8184 is located on chr_2: 28961709..28964626 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8184 | g8184.t4 | TSS | g8184.t4 | 28959387 | 28959387 |
| chr_2 | g8184 | g8184.t4 | isoform | g8184.t4 | 28959488 | 28961709 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon1 | 28959488 | 28959559 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon2 | 28959644 | 28959773 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon3 | 28959838 | 28959923 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon4 | 28959981 | 28960117 |
| chr_2 | g8184 | g8184.t4 | cds | g8184.t4.CDS1 | 28960034 | 28960117 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon5 | 28960172 | 28960802 |
| chr_2 | g8184 | g8184.t4 | cds | g8184.t4.CDS2 | 28960172 | 28960802 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon6 | 28960863 | 28960995 |
| chr_2 | g8184 | g8184.t4 | cds | g8184.t4.CDS3 | 28960863 | 28960995 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon7 | 28961050 | 28961131 |
| chr_2 | g8184 | g8184.t4 | cds | g8184.t4.CDS4 | 28961050 | 28961113 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon8 | 28961343 | 28961399 |
| chr_2 | g8184 | g8184.t4 | exon | g8184.t4.exon9 | 28961476 | 28961709 |
| chr_2 | g8184 | g8184.t4 | TTS | g8184.t4 | 28961881 | 28961881 |
Sequences
>g8184.t4 Gene=g8184 Length=1562
ATGATTTCAAAGTGTTTAAGTTCTTTATTAAAACAAAAAGCAATAGGAATAAACTCAAAT
TACCATCAAAAGATATTAGGCTGCTATTTTTCAATCAGCGCCAGACATAACTCGAAAGCC
TACAAAGGAAAAATTTATTTGAATGCTAAAGATGCAGTCGCTGACATACCCGATGGTGCA
AAAATCTTGGTGGGAGGCTTCGAGGTTTATGTGGAATTCCTGAGAACCTTATTCAAGGTT
TATTAGATATTGGCATCAAAGATTTAACAGTTGTCTCGAATAATGCAGGCGTTGATGATT
TTGGACTTGGTCTTCTTCTCAAAGACCGTCGAATTAAACGCATGATAGCATCATATGTCG
GCGAAAATGCAGAATTCGAAAGACAATATTTATCTGGTGACTTAGAACTTGAATTGACTC
CACAAGGGACATTAGCGGAAAGAATCAGAGCTGGTGGAGCAGGTATTCCTGCATTTTTCA
CACCTACTGGTACTTTTACATTGATTCATGAAGGGGGAAGTCCTATTAAATATGTTAAGG
GTAAAAATAAGGAAGTTGAGATTGCAAGTGCAAAAAGAGAAATGAGAGAATTTAATGGAA
AACCTTATATCATGGAGGAAGCAATTACTGGCGACTTTGCATTAATTCGTGCTTATAAGG
CAGATGAACTTGGAAATTTGATATTTAGAAAATCAGCTAGAAATTTTAATCCACCTATGG
CAAAAGCAGCTAAAATTACAATTGCAGAAGTTGAAGAAATTGTTCCAATTGGTGCACTTC
AACCTGATGAAATTCATCTACCTGGTATTTTTGTGCATCGCATTATTCGCGGAAAATTTG
AAAAGAGAATTGAAAGAATAAAAATTACAAAACCAGAAACTAATGAGAAAAAACTGTCAA
AAGAAGCACTACTTCGAGAAAGAATCGTTCGTCGTGTTGCTTGCGAATATAAAGACGGAA
TGTATATCAATTTAGGAATTGGAATTCCTGTTTTATCAAGCAATTATATACCTAAAGATA
TTACAGTTCATCTTCAATCAGAAAATGGGATTTTAGGCTTGGGGCCTTTTCCAGAAGAAT
ATGCAGTTGATGCTGATTTAATAAATGCTGGAAAAGAAACAGTCACTACTATTCAAGGTG
GTTCATATTTTTCAAGTGACGACTCATTTGGAATGATTAGAGGTATGAAGTGGTCATATG
GATATGACTGTCTTAGGTGCGATGGAAGTTTCTCAATTTGGAGATTTGGCTAATTACATG
ATTCCCGGTTAAAATTAGGTGCGATGGATTTAGTTAGTGCACCCAACACAAAAACTATTA
TTACTATGGAACATAACAGTAAAAATGGTGCACCGAAAATTCTAACAGAATGCTCTTTGC
CATTAACAGGCAAGAATTGTGTAGACATGATTATAACTGAAAAAGCTGTATTTGAGGTTG
ATAAAGAGAAAGGGTTGACTTTAATTGAAATTGCTCCAGATGTAACAATGGAACAATTAG
TCGCATCGACAGGTTGTTCTTTTAAAATTGCAGACGAAATAATCCCAATGAAGCAAATCT
AA
>g8184.t4 Gene=g8184 Length=303
MIASYVGENAEFERQYLSGDLELELTPQGTLAERIRAGGAGIPAFFTPTGTFTLIHEGGS
PIKYVKGKNKEVEIASAKREMREFNGKPYIMEEAITGDFALIRAYKADELGNLIFRKSAR
NFNPPMAKAAKITIAEVEEIVPIGALQPDEIHLPGIFVHRIIRGKFEKRIERIKITKPET
NEKKLSKEALLRERIVRRVACEYKDGMYINLGIGIPVLSSNYIPKDITVHLQSENGILGL
GPFPEEYAVDADLINAGKETVTTIQGGSYFSSDDSFGMIRGMKWSYGYDCLRCDGSFSIW
RFG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8184.t4 | Gene3D | G3DSA:3.40.1080.10 | - | 1 | 164 | 4.2E-74 |
| 8 | g8184.t4 | Gene3D | G3DSA:3.40.1080.10 | - | 187 | 288 | 1.6E-38 |
| 3 | g8184.t4 | PANTHER | PTHR13707 | KETOACID-COENZYME A TRANSFERASE | 1 | 283 | 7.3E-134 |
| 2 | g8184.t4 | Pfam | PF01144 | Coenzyme A transferase | 1 | 162 | 2.5E-49 |
| 1 | g8184.t4 | Pfam | PF01144 | Coenzyme A transferase | 193 | 282 | 1.5E-13 |
| 6 | g8184.t4 | ProSitePatterns | PS01274 | Coenzyme A transferases signature 2. | 231 | 239 | - |
| 5 | g8184.t4 | SMART | SM00882 | CoA_trans_3 | 2 | 164 | 3.1E-30 |
| 4 | g8184.t4 | SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | 1 | 236 | 2.62E-68 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008410 | CoA-transferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
