General information for g8184.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial.
Parent gene
- The parent gene g8184 is located on chr_2: 28961709..28964626 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8184 | g8184.t9 | TSS | g8184.t9 | 28959387 | 28959387 |
| chr_2 | g8184 | g8184.t9 | isoform | g8184.t9 | 28959642 | 28960804 |
| chr_2 | g8184 | g8184.t9 | exon | g8184.t9.exon1 | 28959642 | 28959773 |
| chr_2 | g8184 | g8184.t9 | exon | g8184.t9.exon2 | 28959840 | 28959923 |
| chr_2 | g8184 | g8184.t9 | exon | g8184.t9.exon3 | 28959981 | 28960804 |
| chr_2 | g8184 | g8184.t9 | cds | g8184.t9.CDS1 | 28960328 | 28960804 |
| chr_2 | g8184 | g8184.t9 | TTS | g8184.t9 | NA | NA |
Sequences
>g8184.t9 Gene=g8184 Length=1040
AGATATTAGGCTGCTATTTTTCAATCAGCGCCAGACATAACTCGAAAGCCTACAAAGGAA
AAATTTATTTGAATGCTAAAGATGCAGTCGCTGACATACCCGATGGTGCAAAAATCTTGG
TGGGAGGCTTCGGTTTATGTGGAATTCCTGAGAACCTTATTCAAGGTTTATTAGATATTG
GCATCAAAGATTTAACAGTTGTCTCGAATAATGCAGGCGTTGATGATTTTGGACTTGGTC
TTCTTCTCAAAGACCGTCGAATTAAACGCATGATAGCATCATATGTCGGCGAAAATGCAG
AATTCGAAAGACAATATTTATCTGGTGACTTAGAACTTGAATTGACTCCACAAGTTTGAA
TTTCATTTTTTATGCAAATCAACTGATTTAATTATCTATTTTTTCAGGGGACATTAGCGG
AAAGAATCAGAGCTGGTGGAGCAGGTATTCCTGCATTTTTCACACCTACTGGTACTTTTA
CATTGATTCATGAAGGGGGAAGTCCTATTAAATATGTTAAGGGTAAAAATAAGGAAGTTG
AGATTGCAAGTGCAAAAAGAGAAATGAGAGAATTTAATGGAAAACCTTATATCATGGAGG
AAGCAATTACTGGCGACTTTGCATTAATTCGTGCTTATAAGGCAGATGAACTTGGAAATT
TGATATTTAGAAAATCAGCTAGAAATTTTAATCCACCTATGGCAAAAGCAGCTAAAATTA
CAATTGCAGAAGTTGAAGAAATTGTTCCAATTGGTGCACTTCAACCTGATGAAATTCATC
TACCTGGTATTTTTGTGCATCGCATTATTCGCGGAAAATTTGAAAAGAGAATTGAAAGAA
TAAAAATTACAAAACCAGAAACTAATGAGAAAAAACTGTCAAAAGAAGCACTACTTCGAG
AAAGAATCGTTCGTCGTGTTGCTTGCGAATATAAAGACGGAATGTATATCAATTTAGGAA
TTGGAATTCCTGTTTTATCAAGCAATTATATACCTAAAGATATTACAGTTCATCTTCAAT
CAGAAAATGGGATTTTAGGT
>g8184.t9 Gene=g8184 Length=159
MREFNGKPYIMEEAITGDFALIRAYKADELGNLIFRKSARNFNPPMAKAAKITIAEVEEI
VPIGALQPDEIHLPGIFVHRIIRGKFEKRIERIKITKPETNEKKLSKEALLRERIVRRVA
CEYKDGMYINLGIGIPVLSSNYIPKDITVHLQSENGILG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8184.t9 | Gene3D | G3DSA:3.40.1080.10 | - | 1 | 84 | 6.6E-40 |
| 6 | g8184.t9 | Gene3D | G3DSA:3.40.1080.10 | - | 107 | 159 | 2.7E-17 |
| 2 | g8184.t9 | PANTHER | PTHR13707 | KETOACID-COENZYME A TRANSFERASE | 2 | 159 | 1.1E-67 |
| 1 | g8184.t9 | Pfam | PF01144 | Coenzyme A transferase | 2 | 82 | 2.3E-27 |
| 4 | g8184.t9 | ProSitePatterns | PS01274 | Coenzyme A transferases signature 2. | 151 | 159 | - |
| 3 | g8184.t9 | SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | 2 | 156 | 1.31E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008410 | CoA-transferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
