General information for g8185.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8185 is located on chr_2: 28963057..28964797 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8185 | g8185.t29 | isoform | g8185.t29 | 28961709 | 28963602 |
| chr_2 | g8185 | g8185.t29 | exon | g8185.t29.exon1 | 28961709 | 28962219 |
| chr_2 | g8185 | g8185.t29 | TTS | g8185.t29 | 28961757 | 28961757 |
| chr_2 | g8185 | g8185.t29 | cds | g8185.t29.CDS1 | 28962204 | 28962219 |
| chr_2 | g8185 | g8185.t29 | exon | g8185.t29.exon2 | 28962581 | 28962702 |
| chr_2 | g8185 | g8185.t29 | cds | g8185.t29.CDS2 | 28962581 | 28962702 |
| chr_2 | g8185 | g8185.t29 | exon | g8185.t29.exon3 | 28962761 | 28962952 |
| chr_2 | g8185 | g8185.t29 | cds | g8185.t29.CDS3 | 28962761 | 28962952 |
| chr_2 | g8185 | g8185.t29 | exon | g8185.t29.exon4 | 28963537 | 28963602 |
| chr_2 | g8185 | g8185.t29 | cds | g8185.t29.CDS4 | 28963537 | 28963602 |
| chr_2 | g8185 | g8185.t29 | TSS | g8185.t29 | 28963786 | 28963786 |
Sequences
>g8185.t29 Gene=g8185 Length=891
ATGGGTTTAACTTGTGGAGCATCTGTGGTCAAATATGGCATTTTTATTTTCAACCTTCTT
TGTGCTGTTGCTGGTATAGCATTGATCGTTGTTGGTGCAATTCCACTATTCAAACTTGAT
GACATTCGAGATGCCTTTCCTGAAAACAATCCAGCCACTGTTCCCATCATAATCGTCGTT
CTTGGCTCGATAATCTTTATCATCAGTTTCTTTGGATGTTGTGGAGCTATTAGAGAAAAT
CAGTGTATGGTTTCAACGTACGCATTTTTCCTACTCATATTGGTCGTTCTTCAAATTGTT
ATCGCCGTTTTCGCATTTATGTATACAGGTGAACTTGCGAAAGCTGCAGAAAATGGTTTC
AATAAATTATGGGAAAACAGAAGACAATATGCATAAAAGTCTACAATGTACTAATTTAAT
AGAAATAGGAATTTGAAACCAAATTTTTTTTGTTTAAAAATCTATTCTTATATATCTCTA
ATTAATTTTATAGTACAGCTATAGATTGATGTCAAGAAAATAAGTTTTTTTTTCACTTAT
TTATCGCTATTAATTGATAAGTAAGTTGAATACATATGTGTGTGTGTCACCATTTCTTTG
GTCTATCATCTATATCAATTCTAATTTATCAATCTTAAGTTTCTGTGTGAGCTAGGCACG
GCAGATAAGGGTCACTTCTATATATGCAAGAGAAAAGAAAACACGCCAACAAGAAATATT
TTATTTTTATTTTAGTCTTTTAAAATATGTTATCGTAAAAATTGTATATTTTTTATTCTT
TAAATGTTGTACTTTGAACACAAGTTGTTAATAAACAAAGTAAAAGTGATTAGTTCTTGA
ATAAATGCTTTAAATATCAACAATTCAAAATTTAATGGTAAATAATAATTT
>g8185.t29 Gene=g8185 Length=131
MGLTCGASVVKYGIFIFNLLCAVAGIALIVVGAIPLFKLDDIRDAFPENNPATVPIIIVV
LGSIIFIISFFGCCGAIRENQCMVSTYAFFLLILVVLQIVIAVFAFMYTGELAKAAENGF
NKLWENRRQYA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8185.t29 | PANTHER | PTHR19282 | TETRASPANIN | 6 | 126 | 6.2E-23 |
| 3 | g8185.t29 | PANTHER | PTHR19282:SF471 | CD63 ANTIGEN | 6 | 126 | 6.2E-23 |
| 6 | g8185.t29 | PRINTS | PR00259 | Transmembrane four family signature | 12 | 35 | 9.8E-24 |
| 5 | g8185.t29 | PRINTS | PR00259 | Transmembrane four family signature | 51 | 77 | 9.8E-24 |
| 4 | g8185.t29 | PRINTS | PR00259 | Transmembrane four family signature | 78 | 106 | 9.8E-24 |
| 1 | g8185.t29 | Pfam | PF00335 | Tetraspanin family | 10 | 128 | 3.7E-28 |
| 11 | g8185.t29 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 16 | g8185.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 14 | g8185.t29 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 35 | 53 | - |
| 15 | g8185.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 77 | - |
| 12 | g8185.t29 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 78 | 88 | - |
| 17 | g8185.t29 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 89 | 108 | - |
| 13 | g8185.t29 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 109 | 131 | - |
| 10 | g8185.t29 | ProSitePatterns | PS00421 | Transmembrane 4 family signature. | 62 | 84 | - |
| 9 | g8185.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 7 | g8185.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 76 | - |
| 8 | g8185.t29 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed