Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8185 g8185.t44 TTS g8185.t44 28961757 28961757
chr_2 g8185 g8185.t44 isoform g8185.t44 28961822 28963602
chr_2 g8185 g8185.t44 exon g8185.t44.exon1 28961822 28962247
chr_2 g8185 g8185.t44 cds g8185.t44.CDS1 28962204 28962247
chr_2 g8185 g8185.t44 exon g8185.t44.exon2 28962309 28962702
chr_2 g8185 g8185.t44 cds g8185.t44.CDS2 28962309 28962642
chr_2 g8185 g8185.t44 exon g8185.t44.exon3 28962761 28962880
chr_2 g8185 g8185.t44 exon g8185.t44.exon4 28963533 28963602
chr_2 g8185 g8185.t44 TSS g8185.t44 28963786 28963786

Sequences

>g8185.t44 Gene=g8185 Length=1010
ATGGGTTTAACTTGTGGAGCATCTGTGGTCAAATATGGCATTTTTATTTTCAACCTTCTT
TGTGCTGTAACCTGAAAACAATCCAGCCACTGTTCCCATCATAATCGTCGTTCTTGGCTC
GATAATCTTTATCATCAGTTTCTTTGGATGTTGTGGAGCTATTAGAGAAAATCAGTGTAT
GGTTTCAACGTACGCATTTTTCCTACTCATATTGGTCGTTCTTCAAATTGTTATCGCCGT
TTTCGCATTTATGTATACAGGTGAACTTGCGAAAGCTGCAGAAAATGGTTTCAATAAATT
ATGGGAAAACAGAGACACAAATAATGAAACAAGAATTGCTATCGAAGGCATACAACGCGG
ACTTCGCTGTTGTGGTTCAGCTGGACCCGCTGATTGGGGATTATTAAATATTCCATCTTC
ATGCTGTGATGATGGAGTTATAGCATGCACAGTGTCGAACGCTCATTCAGATGGATGTGC
TACACTTCTTTCCAACTTTGTCAATGATAGTGGACTCTTGATTGCATGGTTTGCAATTGT
CTTTGCTGGTATTGAACTTGTTGGTGTAATCTTCGCCTGTTGTCTGGCCAATTCAATTCG
AAATGCAAACAGAAGACAATATGCATAAAAGTCTACAATGTACTAATTTAATAGAAATAG
GAATTTGAAACCAAATTTTTTTTGTTTAAAAATCTATTCTTATATATCTCTAATTAATTT
TATAGTACAGCTATAGATTGATGTCAAGAAAATAAGTTTTTTTTTCACTTATTTATCGCT
ATTAATTGATAAGTAAGTTGAATACATATGTGTGTGTGTCACCATTTCTTTGGTCTATCA
TCTATATCAATTCTAATTTATCAATCTTAAGTTTCTGTGTGAGCTAGGCACGGCAGATAA
GGGTCACTTCTATATATGCAAGAGAAAAGAAAACACGCCAACAAGAAATATTTTATTTTT
ATTTTAGTCTTTTAAAATATGTTATCGTAAAAATTGTATATTTTTTATTC

>g8185.t44 Gene=g8185 Length=125
MYTGELAKAAENGFNKLWENRDTNNETRIAIEGIQRGLRCCGSAGPADWGLLNIPSSCCD
DGVIACTVSNAHSDGCATLLSNFVNDSGLLIAWFAIVFAGIELVGVIFACCLANSIRNAN
RRQYA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g8185.t44 CDD cd03127 tetraspanin_LEL 2 86 9.17316E-18
6 g8185.t44 Gene3D G3DSA:1.10.1450.10 Tetraspanin 3 85 2.2E-13
2 g8185.t44 PANTHER PTHR19282 TETRASPANIN 8 112 9.1E-15
3 g8185.t44 PANTHER PTHR19282:SF252 TETRASPANIN 8 112 9.1E-15
1 g8185.t44 Pfam PF00335 Tetraspanin family 6 114 2.5E-16
8 g8185.t44 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 89 -
9 g8185.t44 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 90 113 -
7 g8185.t44 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 114 125 -
5 g8185.t44 SUPERFAMILY SSF48652 Tetraspanin 2 86 3.14E-15
4 g8185.t44 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 112 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed