General information for g8189.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Elongation of very long chain fatty acids protein.
Parent gene
- The parent gene g8189 is located on chr_2: 28979849..28981074 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8189 | g8189.t1 | isoform | g8189.t1 | 28979849 | 28981074 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon1 | 28979849 | 28979989 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS1 | 28979849 | 28979989 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon2 | 28980046 | 28980317 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS2 | 28980046 | 28980317 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon3 | 28980381 | 28980417 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS3 | 28980381 | 28980417 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon4 | 28980476 | 28980604 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS4 | 28980476 | 28980604 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon5 | 28980671 | 28980859 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS5 | 28980671 | 28980859 |
| chr_2 | g8189 | g8189.t1 | exon | g8189.t1.exon6 | 28980934 | 28981074 |
| chr_2 | g8189 | g8189.t1 | cds | g8189.t1.CDS6 | 28980934 | 28981074 |
| chr_2 | g8189 | g8189.t1 | TSS | g8189.t1 | NA | NA |
| chr_2 | g8189 | g8189.t1 | TTS | g8189.t1 | NA | NA |
Sequences
>g8189.t1 Gene=g8189 Length=909
ATGGACATAGTAAATAGGATATATGAAGGATGGCGTGACTTAATGGATAACAAATCAGAT
CCACGCACAAAAAATTGGTTTCTAATGGATTCACCTTTTCCTACGATATTAATCAGCGCA
ATATACATTTTCTCAGTCAAGATTATCGGTCCACAGATTATGAAGAATCGAAAGCCATAC
AATGCGAAAAAACTTCAACTCTATTATAATGTCTTTCATCTTATTATCAATATCTATCTA
TTCTATGAAGCATGCACAAATGGATGGCTTGTAAATTATTCATTTCGTTGCCAACCTGTT
GATTTTAGCATGAGTGGTACACCTTATCGTATTGCACGAGGTTGTTGGTTGTATTACATG
AGCAAATTTACTGACTTTTTTGAGACATGCATATTTGTTTTACTCAAACGTTTTGATATG
ATCAATCTTTACCATGTGGCTCATCATAGCATTATGCCGGTGTCAGTTTGGTTTGGTGTC
AAATTTTTAGCTGGAGGTCATTCAACTTTTTTTGGATTTTTAAATACTTTTGTACATATT
GTTATTTACACATATTTTGTGACAATTACATTCTTTCCAAAAACTAAGACAACAATTTTT
AAATGGTGGAAACCTTTTTATCCATATTTTCAAATTGCTCAATTCACATTGATTTTCATT
CATGCCTTTCAATTGGTATTTAGCAATGAATGCAACTATCCAATGAGTTTTGTCTATTTT
ATCGGATTCCACGCACTACTATTTTATGTGTTAGTACGTAGCAAAATGAAAACTGATAAA
TTGAAACTTGTGCAATTGCAGAAGCAAAAAAAAGAAAGATTCAATAATAATGAGGAAAAT
GAGAAATTCAAAATCATTGAAGAGACAAAAGAATTAACTTCTGATACGATCCGATATAGA
ATTCTCTAA
>g8189.t1 Gene=g8189 Length=302
MDIVNRIYEGWRDLMDNKSDPRTKNWFLMDSPFPTILISAIYIFSVKIIGPQIMKNRKPY
NAKKLQLYYNVFHLIINIYLFYEACTNGWLVNYSFRCQPVDFSMSGTPYRIARGCWLYYM
SKFTDFFETCIFVLLKRFDMINLYHVAHHSIMPVSVWFGVKFLAGGHSTFFGFLNTFVHI
VIYTYFVTITFFPKTKTTIFKWWKPFYPYFQIAQFTLIFIHAFQLVFSNECNYPMSFVYF
IGFHALLFYVLVRSKMKTDKLKLVQLQKQKKERFNNNEENEKFKIIEETKELTSDTIRYR
IL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8189.t1 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 3 | 278 | 8.2E-108 |
| 3 | g8189.t1 | PANTHER | PTHR11157:SF151 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN | 3 | 278 | 8.2E-108 |
| 1 | g8189.t1 | Pfam | PF01151 | GNS1/SUR4 family | 28 | 252 | 2.0E-36 |
| 16 | g8189.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 25 | - |
| 20 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 26 | 44 | - |
| 9 | g8189.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 45 | 64 | - |
| 22 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 82 | - |
| 14 | g8189.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 83 | 115 | - |
| 17 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 116 | 135 | - |
| 10 | g8189.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 136 | 141 | - |
| 19 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 164 | - |
| 15 | g8189.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 165 | 169 | - |
| 18 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 170 | 194 | - |
| 12 | g8189.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 195 | 205 | - |
| 23 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 206 | 227 | - |
| 13 | g8189.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 228 | 232 | - |
| 21 | g8189.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 252 | - |
| 11 | g8189.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 253 | 302 | - |
| 8 | g8189.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 26 | 48 | - |
| 6 | g8189.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
| 5 | g8189.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 171 | 193 | - |
| 4 | g8189.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 206 | 228 | - |
| 7 | g8189.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 252 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed