General information for g8192.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-1.
Parent gene
- The parent gene g8192 is located on chr_2: 29019639..29020317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8192 | g8192.t2 | TSS | g8192.t2 | 29016085 | 29016085 |
| chr_2 | g8192 | g8192.t2 | isoform | g8192.t2 | 29016193 | 29018445 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon1 | 29016193 | 29016248 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon2 | 29016620 | 29016695 |
| chr_2 | g8192 | g8192.t2 | cds | g8192.t2.CDS1 | 29016631 | 29016695 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon3 | 29016781 | 29016907 |
| chr_2 | g8192 | g8192.t2 | cds | g8192.t2.CDS2 | 29016781 | 29016907 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon4 | 29016968 | 29017037 |
| chr_2 | g8192 | g8192.t2 | cds | g8192.t2.CDS3 | 29016968 | 29017037 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon5 | 29017101 | 29017258 |
| chr_2 | g8192 | g8192.t2 | cds | g8192.t2.CDS4 | 29017101 | 29017258 |
| chr_2 | g8192 | g8192.t2 | exon | g8192.t2.exon6 | 29018104 | 29018445 |
| chr_2 | g8192 | g8192.t2 | cds | g8192.t2.CDS5 | 29018104 | 29018445 |
| chr_2 | g8192 | g8192.t2 | TTS | g8192.t2 | NA | NA |
Sequences
>g8192.t2 Gene=g8192 Length=829
ATGACTTGGGGCTTTGTAACTTGTGGGCCCAATTCGGCTTTAGTTGTTTCAGGCAAGATG
TTGTCATATGAAACCACTTTTGGTGCCTGGAGGTCGAACATTCGTATGGCCAGGAATACA
AAGAGTACAAAGAATCTCGCTCAATACGATGACACTTCAGGTCGAATCGCCCACTGTTTA
TACAAGTCAGGGCGTTCCTATTAGTGTCACTGGAATTGCACAAGTCAAGATTCAAGGCCA
AAATGAAGATATGCTCTTGACTGCATGTGAACAATTTTTGGGCAAATCAGAATCCGAGAT
TCAACACATAGCACTCGTGACATTAGAGGGGCATCAGCGAGCTATTATGGGGTCAATGAC
AGTCGAAGAAATTTACAAGGATCGTAAAAAGTTCTCAAAACAGGTTTTCGAAGTGGCTTC
ATCTGATTTGGTTAACATGGGCATAACTGTCGTGTCATACACTCTAAAAGATATTCGTGA
CGAGGAGGGATATTTGAAATCATTTGGTATGGCTCGTACTGCAGAGGTTAAGAGAGACGC
TCGCATTGGTGAAGCGGAAGCACGATGCGATGCAACAATCAAAGAAGCAATTGCCGAAGA
ACAGAGAATGGCTGCACGTTTGCTTAATGACACTGAAATTGCTAAAGCACAGCGAGACTT
TGAGTTGAAAAAAGCTGCATATGATGTTGAAGTTCAAACTAAAAAAGCAGAAGCTGAAAT
GGCCTATGAATTGCAAGCTGCCAAAACCAAACAAAGAATCAAAGAAGAGATGATGCAAGT
CAAAGTTGTTGAACGCACACAAGAAATTCAAGTTCAACAGCAGGAAATG
>g8192.t2 Gene=g8192 Length=254
MKPLLVPGGRTFVWPGIQRVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNE
DMLLTACEQFLGKSESEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSD
LVNMGITVVSYTLKDIRDEEGYLKSFGMARTAEVKRDARIGEAEARCDATIKEAIAEEQR
MAARLLNDTEIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQRIKEEMMQVKV
VERTQEIQVQQQEM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8192.t2 | CDD | cd03399 | SPFH_flotillin | 12 | 157 | 0 |
| 6 | g8192.t2 | Gene3D | G3DSA:3.30.479.30 | - | 23 | 140 | 0 |
| 2 | g8192.t2 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 2 | 254 | 0 |
| 3 | g8192.t2 | PANTHER | PTHR13806:SF16 | FLOTILLIN-1 | 2 | 254 | 0 |
| 1 | g8192.t2 | Pfam | PF01145 | SPFH domain / Band 7 family | 7 | 165 | 0 |
| 5 | g8192.t2 | SMART | SM00244 | PHB_4 | 66 | 248 | 0 |
| 4 | g8192.t2 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 14 | 157 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
