General information for g8192.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-1.
Parent gene
- The parent gene g8192 is located on chr_2: 29019639..29020317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8192 | g8192.t4 | TSS | g8192.t4 | 29016085 | 29016085 |
| chr_2 | g8192 | g8192.t4 | isoform | g8192.t4 | 29016193 | 29019639 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon1 | 29016193 | 29016248 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon2 | 29016620 | 29016695 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS1 | 29016631 | 29016695 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon3 | 29016781 | 29016907 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS2 | 29016781 | 29016907 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon4 | 29016968 | 29017037 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS3 | 29016968 | 29017037 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon5 | 29017101 | 29017258 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS4 | 29017101 | 29017258 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon6 | 29018104 | 29018469 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS5 | 29018104 | 29018469 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon7 | 29018533 | 29018637 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS6 | 29018533 | 29018637 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon8 | 29018698 | 29018841 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS7 | 29018698 | 29018841 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon9 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS8 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t4 | exon | g8192.t4.exon10 | 29019622 | 29019639 |
| chr_2 | g8192 | g8192.t4 | cds | g8192.t4.CDS9 | 29019622 | 29019639 |
| chr_2 | g8192 | g8192.t4 | TTS | g8192.t4 | 29020387 | 29020387 |
Sequences
>g8192.t4 Gene=g8192 Length=1285
ATGACTTGGGGCTTTGTAACTTGTGGGCCCAATTCGGCTTTAGTTGTTTCAGGCAAGATG
TTGTCATATGAAACCACTTTTGGTGCCTGGAGGTCGAACATTCGTATGGCCAGGAATACA
AAGAGTACAAAGAATCTCGCTCAATACGATGACACTTCAGGTCGAATCGCCCACTGTTTA
TACAAGTCAGGGCGTTCCTATTAGTGTCACTGGAATTGCACAAGTCAAGATTCAAGGCCA
AAATGAAGATATGCTCTTGACTGCATGTGAACAATTTTTGGGCAAATCAGAATCCGAGAT
TCAACACATAGCACTCGTGACATTAGAGGGGCATCAGCGAGCTATTATGGGGTCAATGAC
AGTCGAAGAAATTTACAAGGATCGTAAAAAGTTCTCAAAACAGGTTTTCGAAGTGGCTTC
ATCTGATTTGGTTAACATGGGCATAACTGTCGTGTCATACACTCTAAAAGATATTCGTGA
CGAGGAGGGATATTTGAAATCATTTGGTATGGCTCGTACTGCAGAGGTTAAGAGAGACGC
TCGCATTGGTGAAGCGGAAGCACGATGCGATGCAACAATCAAAGAAGCAATTGCCGAAGA
ACAGAGAATGGCTGCACGTTTGCTTAATGACACTGAAATTGCTAAAGCACAGCGAGACTT
TGAGTTGAAAAAAGCTGCATATGATGTTGAAGTTCAAACTAAAAAAGCAGAAGCTGAAAT
GGCCTATGAATTGCAAGCTGCCAAAACCAAACAAAGAATCAAAGAAGAGATGATGCAAGT
CAAAGTTGTTGAACGCACACAAGAAATTCAAGTTCAACAGCAGGAAATGCTAAGACGTGA
ACGTGAATTAGAGGCAACTGTTCGTCGACCAGCTGAAGCTGAAAAATACAGACTTGAAAA
ATTGGCTGAAGCAAATAAAAATCGCGTCATTTTGGAAGCTGAAGCAGAATCTGAAGCTAT
CAAAATTCGCGGAGAAGCAGAATCATTTGCAATTCACGCCAAAGCAAAAGCAGAAGCTGA
ACAAATGGCAAAAAAAGCAGAGGCCTTTAAAGAATACAGAGAAGCAGCAATGATTGAAAT
GGTTTTGGATACATTACCAAAGATTATCGCCGAAGTTGGAGCACCAATATCTCAAACAAA
GAAGATTACAATGGTTTCAACTGGCAATAGTGAAATCGGCGCAGCTAAATTAACAGGAGA
AGTTCTTTCAATTGCTGGAAAAATACCAGAGCTAGTTAAACAAATGACCAACATTGATAT
CTCTCGGTCCGTGCATGCTGGATAA
>g8192.t4 Gene=g8192 Length=405
MKPLLVPGGRTFVWPGIQRVQRISLNTMTLQVESPTVYTSQGVPISVTGIAQVKIQGQNE
DMLLTACEQFLGKSESEIQHIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSD
LVNMGITVVSYTLKDIRDEEGYLKSFGMARTAEVKRDARIGEAEARCDATIKEAIAEEQR
MAARLLNDTEIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQRIKEEMMQVKV
VERTQEIQVQQQEMLRRERELEATVRRPAEAEKYRLEKLAEANKNRVILEAEAESEAIKI
RGEAESFAIHAKAKAEAEQMAKKAEAFKEYREAAMIEMVLDTLPKIIAEVGAPISQTKKI
TMVSTGNSEIGAAKLTGEVLSIAGKIPELVKQMTNIDISRSVHAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8192.t4 | CDD | cd03399 | SPFH_flotillin | 12 | 157 | 1.30264E-66 |
| 8 | g8192.t4 | Coils | Coil | Coil | 279 | 299 | - |
| 7 | g8192.t4 | Gene3D | G3DSA:3.30.479.30 | - | 23 | 140 | 9.8E-42 |
| 3 | g8192.t4 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 2 | 401 | 8.6E-218 |
| 4 | g8192.t4 | PANTHER | PTHR13806:SF16 | FLOTILLIN-1 | 2 | 401 | 8.6E-218 |
| 1 | g8192.t4 | Pfam | PF01145 | SPFH domain / Band 7 family | 7 | 165 | 4.2E-19 |
| 2 | g8192.t4 | Pfam | PF15975 | Flotillin | 292 | 369 | 5.8E-7 |
| 6 | g8192.t4 | SMART | SM00244 | PHB_4 | 66 | 248 | 1.7E-18 |
| 5 | g8192.t4 | SUPERFAMILY | SSF117892 | Band 7/SPFH domain | 14 | 157 | 5.62E-35 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K07192 (flotillin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed