General information for g8192.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Flotillin-1.
Parent gene
- The parent gene g8192 is located on chr_2: 29019639..29020317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8192 | g8192.t6 | isoform | g8192.t6 | 29018114 | 29019639 |
| chr_2 | g8192 | g8192.t6 | exon | g8192.t6.exon1 | 29018114 | 29018469 |
| chr_2 | g8192 | g8192.t6 | cds | g8192.t6.CDS1 | 29018125 | 29018469 |
| chr_2 | g8192 | g8192.t6 | exon | g8192.t6.exon2 | 29018533 | 29018637 |
| chr_2 | g8192 | g8192.t6 | cds | g8192.t6.CDS2 | 29018533 | 29018637 |
| chr_2 | g8192 | g8192.t6 | exon | g8192.t6.exon3 | 29018698 | 29018841 |
| chr_2 | g8192 | g8192.t6 | cds | g8192.t6.CDS3 | 29018698 | 29018841 |
| chr_2 | g8192 | g8192.t6 | exon | g8192.t6.exon4 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t6 | cds | g8192.t6.CDS4 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t6 | exon | g8192.t6.exon5 | 29019622 | 29019639 |
| chr_2 | g8192 | g8192.t6 | cds | g8192.t6.CDS5 | 29019622 | 29019639 |
| chr_2 | g8192 | g8192.t6 | TTS | g8192.t6 | 29020387 | 29020387 |
| chr_2 | g8192 | g8192.t6 | TSS | g8192.t6 | NA | NA |
Sequences
>g8192.t6 Gene=g8192 Length=788
AATCATTTGGTATGGCTCGTACTGCAGAGGTTAAGAGAGACGCTCGCATTGGTGAAGCGG
AAGCACGATGCGATGCAACAATCAAAGAAGCAATTGCCGAAGAACAGAGAATGGCTGCAC
GTTTGCTTAATGACACTGAAATTGCTAAAGCACAGCGAGACTTTGAGTTGAAAAAAGCTG
CATATGATGTTGAAGTTCAAACTAAAAAAGCAGAAGCTGAAATGGCCTATGAATTGCAAG
CTGCCAAAACCAAACAAAGAATCAAAGAAGAGATGATGCAAGTCAAAGTTGTTGAACGCA
CACAAGAAATTCAAGTTCAACAGCAGGAAATGCTAAGACGTGAACGTGAATTAGAGGCAA
CTGTTCGTCGACCAGCTGAAGCTGAAAAATACAGACTTGAAAAATTGGCTGAAGCAAATA
AAAATCGCGTCATTTTGGAAGCTGAAGCAGAATCTGAAGCTATCAAAATTCGCGGAGAAG
CAGAATCATTTGCAATTCACGCCAAAGCAAAAGCAGAAGCTGAACAAATGGCAAAAAAAG
CAGAGGCCTTTAAAGAATACAGAGAAGCAGCAATGATTGAAATGGTTTTGGATACATTAC
CAAAGATTATCGCCGAAGTTGGAGCACCAATATCTCAAACAAAGAAGATTACAATGGTTT
CAACTGGCAATAGTGAAATCGGCGCAGCTAAATTAACAGGAGAAGTTCTTTCAATTGCTG
GAAAAATACCAGAGCTAGTTAAACAAATGACCAACATTGATATCTCTCGGTCCGTGCATG
CTGGATAA
>g8192.t6 Gene=g8192 Length=258
MARTAEVKRDARIGEAEARCDATIKEAIAEEQRMAARLLNDTEIAKAQRDFELKKAAYDV
EVQTKKAEAEMAYELQAAKTKQRIKEEMMQVKVVERTQEIQVQQQEMLRRERELEATVRR
PAEAEKYRLEKLAEANKNRVILEAEAESEAIKIRGEAESFAIHAKAKAEAEQMAKKAEAF
KEYREAAMIEMVLDTLPKIIAEVGAPISQTKKITMVSTGNSEIGAAKLTGEVLSIAGKIP
ELVKQMTNIDISRSVHAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8192.t6 | Coils | Coil | Coil | 132 | 152 | - |
| 2 | g8192.t6 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 254 | 1.1E-117 |
| 3 | g8192.t6 | PANTHER | PTHR13806:SF16 | FLOTILLIN-1 | 1 | 254 | 1.1E-117 |
| 1 | g8192.t6 | Pfam | PF15975 | Flotillin | 145 | 222 | 3.3E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
