General information for g8192.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flotillin-1.
Parent gene
- The parent gene g8192 is located on chr_2: 29019639..29020317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8192 | g8192.t7 | isoform | g8192.t7 | 29018629 | 29020317 |
| chr_2 | g8192 | g8192.t7 | exon | g8192.t7.exon1 | 29018629 | 29018637 |
| chr_2 | g8192 | g8192.t7 | exon | g8192.t7.exon2 | 29018698 | 29018841 |
| chr_2 | g8192 | g8192.t7 | cds | g8192.t7.CDS1 | 29018764 | 29018841 |
| chr_2 | g8192 | g8192.t7 | exon | g8192.t7.exon3 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t7 | cds | g8192.t7.CDS2 | 29018901 | 29019065 |
| chr_2 | g8192 | g8192.t7 | exon | g8192.t7.exon4 | 29019622 | 29020317 |
| chr_2 | g8192 | g8192.t7 | cds | g8192.t7.CDS3 | 29019622 | 29019639 |
| chr_2 | g8192 | g8192.t7 | TTS | g8192.t7 | 29019774 | 29019774 |
| chr_2 | g8192 | g8192.t7 | TSS | g8192.t7 | NA | NA |
Sequences
>g8192.t7 Gene=g8192 Length=1014
TCTGAAGCTATCAAAATTCGCGGAGAAGCAGAATCATTTGCAATTCACGCCAAAGCAAAA
GCAGAAGCTGAACAAATGGCAAAAAAAGCAGAGGCCTTTAAAGAATACAGAGAAGCAGCA
ATGATTGAAATGGTTTTGGATACATTACCAAAGATTATCGCCGAAGTTGGAGCACCAATA
TCTCAAACAAAGAAGATTACAATGGTTTCAACTGGCAATAGTGAAATCGGCGCAGCTAAA
TTAACAGGAGAAGTTCTTTCAATTGCTGGAAAAATACCAGAGCTAGTTAAACAAATGACC
AACATTGATATCTCTCGGTCCGTGCATGCTGGATAAGTATATGCTGAAGACGAAGTTAAA
TTATTAAATGATGAAAATTAAAAAACGTAATCCTTTTCGTTTTATGTGTACTTTGTGTCT
TTATTTTGATAATTTTTAAAGGTGAGTTAAAATAAAGAGATACATGCACGAATATATTGA
ACATTTATTATTATTTGAGTAAAAAATTTGCACTTATTATTTCAAAAGTCGATTGTGCAA
TTTTTTTTTATTGTCTTATTGTACTGCCTATCTTTAATTTATATAAAAAAGTAATTTCGA
ACGTAACATTTATTTTATGAGCATTTTTTATCATGATTTCTACAAATATATATACATACT
TATCTAATACACCAAAAAATAATATAATAAAAAACACAAATTATTGTTTTAAGAATCTCT
TGCTGCCACTTATTTGGACTTTGAAAATTTTACATTTGATTGTCTTGTTTGAAGAGAATT
TTATAAAATGAGTCCTTTTGATAAATAATGTGAAATAGAAGTGAAACACACCTCACATAA
ATAATTTAACCCTCAAATCTCGATAAAGTCAGCATTAAAGTAATATATCCTATTTTAAAA
CCATTTCAAAAACATTTAACAATTGAAAAAAAAAAAAAAATTTCAATGCTACTCTATAGC
AGAGTATCTAAATATATAAAATAAAATTCTGTCCATATACTTGTACTTTTGCCA
>g8192.t7 Gene=g8192 Length=86
MAKKAEAFKEYREAAMIEMVLDTLPKIIAEVGAPISQTKKITMVSTGNSEIGAAKLTGEV
LSIAGKIPELVKQMTNIDISRSVHAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8192.t7 | PANTHER | PTHR13806 | FLOTILLIN-RELATED | 1 | 82 | 0 |
| g8192.t7 | PANTHER | PTHR13806:SF16 | FLOTILLIN-1 | 1 | 82 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
