Gene loci information

Transcript annotation

  • This transcript has been annotated as Proteasome subunit alpha type-6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8196 g8196.t13 TTS g8196.t13 29032936 29032936
chr_2 g8196 g8196.t13 isoform g8196.t13 29033073 29033953
chr_2 g8196 g8196.t13 exon g8196.t13.exon1 29033073 29033322
chr_2 g8196 g8196.t13 cds g8196.t13.CDS1 29033303 29033322
chr_2 g8196 g8196.t13 exon g8196.t13.exon2 29033524 29033796
chr_2 g8196 g8196.t13 cds g8196.t13.CDS2 29033524 29033796
chr_2 g8196 g8196.t13 exon g8196.t13.exon3 29033878 29033953
chr_2 g8196 g8196.t13 cds g8196.t13.CDS3 29033878 29033953
chr_2 g8196 g8196.t13 TSS g8196.t13 29034047 29034047

Sequences

>g8196.t13 Gene=g8196 Length=599
ATGTCTCGAGGCAGTAGCGCAGGATTTGATCGTCATATTACAATTTTTTCACCTGAAGGA
AGACTGTATCAAGTTGAATATGCTTTCAAAGCAATTAATCAAGAAGGAAATACTTCTGTG
GCATTAAAAGGCAAGGATGTTGCAGTTGTTGCGACTCAAAAAAAAGTTCCTGATAAGCTT
ATTGATCCCGAGACTGTTACACACTTATTTAGAATAACCAAAAGAATTGGGTGTGTTATG
ACAGGAAAGCTGGCTGATAGTAAATCGCAAGTTCAGCGGGCACAGTATGAAGCTGCTAAC
TGGAAATATAAATTTGGATATGAGATTCCAATCGATGTTCTCTGTCGTCAGCTGTCTCTG
TTGGTGTAAAACAAACTGAAGCCAACAGTTATTTGGAAAAGAAATTCAAGAAGAAAACCG
ATTATACTGAAAATGAAGCTATTCAATTAGCTATTTCTTGCTTATCTACTGTCTTAGCAC
TAGATTTCAAATCGACTGAAATTGAAGTTGGAATTACAACACGAGATAATCCAGAGTTCA
GACCTTTAACAAAAGATGAAATTGAAAAGCATTTAAACGAAATTGCTGAGAAGGACTAA

>g8196.t13 Gene=g8196 Length=122
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQEGNTSVALKGKDVAVVATQKKVPDKL
IDPETVTHLFRITKRIGCVMTGKLADSKSQVQRAQYEAANWKYKFGYEIPIDVLCRQLSL
LV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8196.t13 Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate 1 122 1.6E-44
3 g8196.t13 PANTHER PTHR11599 PROTEASOME SUBUNIT ALPHA/BETA 1 118 1.2E-58
4 g8196.t13 PANTHER PTHR11599:SF110 PROTEASOME SUBUNIT ALPHA TYPE 1 118 1.2E-58
2 g8196.t13 Pfam PF10584 Proteasome subunit A N-terminal signature 9 31 1.2E-14
1 g8196.t13 Pfam PF00227 Proteasome subunit 35 119 3.9E-22
7 g8196.t13 ProSitePatterns PS00388 Proteasome alpha-type subunits signature. 9 31 -
9 g8196.t13 ProSiteProfiles PS51475 Proteasome alpha-type subunit profile. 24 122 37.712
6 g8196.t13 SMART SM00948 Proteasome_A_N_2 9 31 6.6E-11
5 g8196.t13 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 8 119 1.61E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019773 proteasome core complex, alpha-subunit complex CC
GO:0051603 proteolysis involved in cellular protein catabolic process BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0005839 proteasome core complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed