General information for g8198.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ribonuclease P protein subunit p25-like protein.
Parent gene
- The parent gene g8198 is located on chr_2: 29035743..29036437 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8198 | g8198.t1 | TTS | g8198.t1 | 29035675 | 29035675 |
| chr_2 | g8198 | g8198.t1 | isoform | g8198.t1 | 29035743 | 29036437 |
| chr_2 | g8198 | g8198.t1 | exon | g8198.t1.exon1 | 29035743 | 29036106 |
| chr_2 | g8198 | g8198.t1 | cds | g8198.t1.CDS1 | 29035743 | 29036106 |
| chr_2 | g8198 | g8198.t1 | exon | g8198.t1.exon2 | 29036160 | 29036437 |
| chr_2 | g8198 | g8198.t1 | cds | g8198.t1.CDS2 | 29036160 | 29036437 |
| chr_2 | g8198 | g8198.t1 | TSS | g8198.t1 | NA | NA |
Sequences
>g8198.t1 Gene=g8198 Length=642
ATGGAAAATTACAAAAAAGGTAGAAATGTCGAAGAAGAACTTTCAAAAGAACATATACCG
ATTGAAGTACTTCCAGAAAATTTTTTATGGATGCATGTAAAAGGTGGTACAAAAGTATCA
AATGTGGTTGAATACGCACAGAATGTATTAAGATCAGGCGAATATACTTCTATTGTATGG
AGTGGTAGTGGTGGTGGTGTTCCAAAAACTATTTCTTGCGTGGAGATTATGAAAAGAAAT
TTTAATTTAAATCAAGTAACTCGTCTCTCCTATCAGAAAATCGAAGAATTTTGGGATCCA
CTTCTAAATGGACTTGAACAAATTGTCGTGACTCGTCGAGTACCAGCTATTCATATATTG
CTTACTTTAGATGAAATTGATCCAAAAATAACCGGTCATCAAAAGACCAATGTGCCCACT
AAATTTTGGCCATCTAATAAAGAAACGCATGACAATGATTACGTGTTTAAACAGAAAAGA
AATAACGGAAATAACAATGCTAACAGTCGAGGTAAAGGAAATCAAAACTATCGTCAAAAA
AATCAAAATAGCGCAAAAAAAATTGGCGAAGAAACATCTCAGAAACGGAAAAATATTAAT
AAGAAAAACGAAGATAAAAGTGATCTATCATATCATGATTAA
>g8198.t1 Gene=g8198 Length=213
MENYKKGRNVEEELSKEHIPIEVLPENFLWMHVKGGTKVSNVVEYAQNVLRSGEYTSIVW
SGSGGGVPKTISCVEIMKRNFNLNQVTRLSYQKIEEFWDPLLNGLEQIVVTRRVPAIHIL
LTLDEIDPKITGHQKTNVPTKFWPSNKETHDNDYVFKQKRNNGNNNANSRGKGNQNYRQK
NQNSAKKIGEETSQKRKNINKKNEDKSDLSYHD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8198.t1 | Gene3D | G3DSA:3.30.110.20 | - | 31 | 125 | 1.9E-10 |
| 6 | g8198.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 188 | - |
| 7 | g8198.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 213 | - |
| 5 | g8198.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 213 | - |
| 2 | g8198.t1 | PANTHER | PTHR13516:SF4 | FI09323P | 1 | 205 | 4.2E-35 |
| 3 | g8198.t1 | PANTHER | PTHR13516 | RIBONUCLEASE P SUBUNIT P25 | 1 | 205 | 4.2E-35 |
| 1 | g8198.t1 | Pfam | PF01918 | Alba | 30 | 91 | 1.8E-14 |
| 4 | g8198.t1 | SUPERFAMILY | SSF82704 | AlbA-like | 31 | 122 | 9.29E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K14525 (ribonucleases P/MRP protein subunit RPP25)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
