General information for g8198.t63
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ribonuclease P protein subunit p25-like protein.
Parent gene
- The parent gene g8198 is located on chr_2: 29035743..29036437 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8198 | g8198.t63 | TTS | g8198.t63 | 29035675 | 29035675 |
| chr_2 | g8198 | g8198.t63 | isoform | g8198.t63 | 29035743 | 29036437 |
| chr_2 | g8198 | g8198.t63 | exon | g8198.t63.exon1 | 29035743 | 29036098 |
| chr_2 | g8198 | g8198.t63 | cds | g8198.t63.CDS1 | 29035743 | 29036098 |
| chr_2 | g8198 | g8198.t63 | exon | g8198.t63.exon2 | 29036176 | 29036437 |
| chr_2 | g8198 | g8198.t63 | cds | g8198.t63.CDS2 | 29036176 | 29036437 |
| chr_2 | g8198 | g8198.t63 | TSS | g8198.t63 | NA | NA |
Sequences
>g8198.t63 Gene=g8198 Length=618
ATGGAAAATTACAAAAAAGGTAGAAATGTCGAAGAAGAACTTTCAAAAGAACATATACCG
ATTGAAGTACTTCCAGAAAATTTTTTATGGATGCATGTAAAAGGTGGTACAAAAGTATCA
AATGTGGTTGAATACGCACAGAATGTATTAAGATCAGGCGAATATACTTCTATTGTATGG
AGTGGTAGTGGTGGTGGTGTTCCAAAAACTATTTCTTGCGTGGAGATTATGAAAAGAAAT
TTTAATTTAAATCAAGTAACTCAATTTTGGGATCCACTTCTAAATGGACTTGAACAAATT
GTCGTGACTCGTCGAGTACCAGCTATTCATATATTGCTTACTTTAGATGAAATTGATCCA
AAAATAACCGGTCATCAAAAGACCAATGTGCCCACTAAATTTTGGCCATCTAATAAAGAA
ACGCATGACAATGATTACGTGTTTAAACAGAAAAGAAATAACGGAAATAACAATGCTAAC
AGTCGAGGTAAAGGAAATCAAAACTATCGTCAAAAAAATCAAAATAGCGCAAAAAAAATT
GGCGAAGAAACATCTCAGAAACGGAAAAATATTAATAAGAAAAACGAAGATAAAAGTGAT
CTATCATATCATGATTAA
>g8198.t63 Gene=g8198 Length=205
MENYKKGRNVEEELSKEHIPIEVLPENFLWMHVKGGTKVSNVVEYAQNVLRSGEYTSIVW
SGSGGGVPKTISCVEIMKRNFNLNQVTQFWDPLLNGLEQIVVTRRVPAIHILLTLDEIDP
KITGHQKTNVPTKFWPSNKETHDNDYVFKQKRNNGNNNANSRGKGNQNYRQKNQNSAKKI
GEETSQKRKNINKKNEDKSDLSYHD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8198.t63 | Gene3D | G3DSA:3.30.110.20 | - | 31 | 117 | 1.5E-8 |
| 5 | g8198.t63 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 205 | - |
| 7 | g8198.t63 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 180 | - |
| 6 | g8198.t63 | MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 205 | - |
| 2 | g8198.t63 | PANTHER | PTHR13516:SF4 | FI09323P | 1 | 197 | 5.7E-29 |
| 3 | g8198.t63 | PANTHER | PTHR13516 | RIBONUCLEASE P SUBUNIT P25 | 1 | 197 | 5.7E-29 |
| 1 | g8198.t63 | Pfam | PF01918 | Alba | 30 | 87 | 2.1E-13 |
| 4 | g8198.t63 | SUPERFAMILY | SSF82704 | AlbA-like | 31 | 113 | 3.27E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed