General information for g8208.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8208 is located on chr_2: 29063524..29063916 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8208 | g8208.t3 | TTS | g8208.t3 | 29062286 | 29062286 |
| chr_2 | g8208 | g8208.t3 | isoform | g8208.t3 | 29062310 | 29063695 |
| chr_2 | g8208 | g8208.t3 | exon | g8208.t3.exon1 | 29062310 | 29063695 |
| chr_2 | g8208 | g8208.t3 | cds | g8208.t3.CDS1 | 29062862 | 29063695 |
| chr_2 | g8208 | g8208.t3 | TSS | g8208.t3 | 29063965 | 29063965 |
Sequences
>g8208.t3 Gene=g8208 Length=1386
ATGACAACAAAAATATTGGTACCGAGAATTCAAAGAGATTCTTCAGTCTCATCTTCAAAT
AGTGAGCTCACTATTCGAAGCACACCAGGAAGAAAACGCAAGCTCGACCACTTGACACAA
GAAGAGAAGGTGCAAAGAAAAAAATTGAAAAATCGAGTAGCAGCTCAAACATCTAGAGAC
AGAAAAAAGAAACAAATGGAAGAAATGCTCATCACAATCGAGAGACAAACAAAAGAATTA
TCACAATGGGAGCACAGATATAACCAGCTGAAAACAAAATATGATAAACTCGAGAGAGAA
GTTGCTAAATTAAAACAGGCAAATAAGAACAGTAACAATACCAAACAAGAATCTTTTAGC
AGAAATAGCATTCCAGAGGAGCACAAGTACACACGTTTATCACAAGAGGATATGCGAAAT
GAGGATTTCTCTGTTGGTTCTGTTATCATCAAATCTGAAGGACCTGCTGTGTCCCAACCT
CTGCCGAAGGTATTAATGATGAAAACAGAGACGACAGAAAAATCAGCAATCAAAGATTCT
CAGAAGAAGAAAAAGAACGATGTGAAGGCCTTATTGAAGGTAATAATGCTCTGCCTACTC
TACAAGAACTCATCGATGGGATCAACTTCGAATACGATCTTGAAGAGCTTGCAGAAAGCC
TTGTCTCCGAACTCCATTCAAACATGGAAATCAATTCTGCAACAGGCAATTGCGCAAATG
CCAAAGAAGACAGCAACGAATGCGAATTGTCTCGACCAATGGTGGACGAGCCAATGTCTT
GGTCCAGAAAATCGAGAATGGAATCCGCCAAAGATCGCCATAGAAGTTCATTAAAGCAAC
GTTCCAGCTCAAAGCGACTACATGATGCAAAAACAAGCCATAATGGATCAGATAATGAAA
CATACAACGTGGATAAAATTTTTTACGATGATGAAATACCGGTTGTTAAAGACGAGTGTT
TTGGAGTCGAGGAGATGATTATTTGTGACGACAGTGAGGAAGATGATACTGATTGCTTAG
ATATTTGTTCGAAATTCAAATCATCACCAGTTGATCGTTTAATTTCACCTATACCACACA
GTGATTATGATGACATTAAAAGTCCACTGCACACAATTTCTGATGGCGGATATGAATCAC
AAGGATCACCTATATCACTAGATGAATTCACATCACTCAACGATCCACAAAATGATTTTG
ATCTTCTTATAAATGACCTATTTCCTTCTTTAGTGTAAGCTATTTTATTCAAAACTAAAT
TAATTTTAAGCTACATTATATTGTGTTAATTATTGTTGTATGTTTCATTAAGAATTTATT
ATATAAATTTATATTCTATCTAGGCTTTAGTTATCATGCATTGTGTAATAAAAAATTCTT
TGAGAA
>g8208.t3 Gene=g8208 Length=277
MTTKILVPRIQRDSSVSSSNSELTIRSTPGRKRKLDHLTQEEKVQRKKLKNRVAAQTSRD
RKKKQMEEMLITIERQTKELSQWEHRYNQLKTKYDKLEREVAKLKQANKNSNNTKQESFS
RNSIPEEHKYTRLSQEDMRNEDFSVGSVIIKSEGPAVSQPLPKVLMMKTETTEKSAIKDS
QKKKKNDVKALLKVIMLCLLYKNSSMGSTSNTILKSLQKALSPNSIQTWKSILQQAIAQM
PKKTATNANCLDQWWTSQCLGPENREWNPPKIAIEVH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8208.t3 | Coils | Coil | Coil | 59 | 117 | - |
| 4 | g8208.t3 | Gene3D | G3DSA:1.20.5.170 | - | 43 | 110 | 1.7E-5 |
| 10 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - |
| 11 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 12 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 46 | - |
| 8 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 137 | - |
| 9 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 120 | - |
| 13 | g8208.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - |
| 2 | g8208.t3 | PANTHER | PTHR46542 | X-BOX BINDING PROTEIN 1 | 8 | 186 | 4.0E-19 |
| 1 | g8208.t3 | Pfam | PF07716 | Basic region leucine zipper | 40 | 92 | 7.5E-7 |
| 6 | g8208.t3 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 46 | 61 | - |
| 14 | g8208.t3 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 41 | 104 | 9.622 |
| 7 | g8208.t3 | SMART | SM00338 | brlzneu | 39 | 103 | 3.8E-8 |
| 3 | g8208.t3 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 41 | 92 | 8.81E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09027 (X box-binding protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
