Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8208 g8208.t5 TTS g8208.t5 29062286 29062286
chr_2 g8208 g8208.t5 isoform g8208.t5 29062346 29063695
chr_2 g8208 g8208.t5 exon g8208.t5.exon1 29062346 29062962
chr_2 g8208 g8208.t5 cds g8208.t5.CDS1 29062873 29062962
chr_2 g8208 g8208.t5 exon g8208.t5.exon2 29063135 29063695
chr_2 g8208 g8208.t5 cds g8208.t5.CDS2 29063135 29063695
chr_2 g8208 g8208.t5 TSS g8208.t5 29063965 29063965

Sequences

>g8208.t5 Gene=g8208 Length=1178
ATGACAACAAAAATATTGGTACCGAGAATTCAAAGAGATTCTTCAGTCTCATCTTCAAAT
AGTGAGCTCACTATTCGAAGCACACCAGGAAGAAAACGCAAGCTCGACCACTTGACACAA
GAAGAGAAGGTGCAAAGAAAAAAATTGAAAAATCGAGTAGCAGCTCAAACATCTAGAGAC
AGAAAAAAGAAACAAATGGAAGAAATGCTCATCACAATCGAGAGACAAACAAAAGAATTA
TCACAATGGGAGCACAGATATAACCAGCTGAAAACAAAATATGATAAACTCGAGAGAGAA
GTTGCTAAATTAAAACAGGCAAATAAGAACAGTAACAATACCAAACAAGAATCTTTTAGC
AGAAATAGCATTCCAGAGGAGCACAAGTACACACGTTTATCACAAGAGGATATGCGAAAT
GAGGATTTCTCTGTTGGTTCTGTTATCATCAAATCTGAAGGACCTGCTGTGTCCCAACCT
CTGCCGAAGGTATTAATGATGAAAACAGAGACGACAGAAAAATCAGCAATCAAAGATTCT
CAGAAGAAGAAAAAGAACGATCAACGAATGCGAATTGTCTCGACCAATGGTGGACGAGCC
AATGTCTTGGTCCAGAAAATCGAGAATGGAATCCGCCAAAGATCGCCATAGAAGTTCATT
AAAGCAACGTTCCAGCTCAAAGCGACTACATGATGCAAAAACAAGCCATAATGGATCAGA
TAATGAAACATACAACGTGGATAAAATTTTTTACGATGATGAAATACCGGTTGTTAAAGA
CGAGTGTTTTGGAGTCGAGGAGATGATTATTTGTGACGACAGTGAGGAAGATGATACTGA
TTGCTTAGATATTTGTTCGAAATTCAAATCATCACCAGTTGATCGTTTAATTTCACCTAT
ACCACACAGTGATTATGATGACATTAAAAGTCCACTGCACACAATTTCTGATGGCGGATA
TGAATCACAAGGATCACCTATATCACTAGATGAATTCACATCACTCAACGATCCACAAAA
TGATTTTGATCTTCTTATAAATGACCTATTTCCTTCTTTAGTGTAAGCTATTTTATTCAA
AACTAAATTAATTTTAAGCTACATTATATTGTGTTAATTATTGTTGTATGTTTCATTAAG
AATTTATTATATAAATTTATATTCTATCTAGGCTTTAG

>g8208.t5 Gene=g8208 Length=216
MTTKILVPRIQRDSSVSSSNSELTIRSTPGRKRKLDHLTQEEKVQRKKLKNRVAAQTSRD
RKKKQMEEMLITIERQTKELSQWEHRYNQLKTKYDKLEREVAKLKQANKNSNNTKQESFS
RNSIPEEHKYTRLSQEDMRNEDFSVGSVIIKSEGPAVSQPLPKVLMMKTETTEKSAIKDS
QKKKKNDQRMRIVSTNGGRANVLVQKIENGIRQRSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8208.t5 Coils Coil Coil 59 117 -
4 g8208.t5 Gene3D G3DSA:1.20.5.170 - 43 110 1.1E-5
9 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 64 -
11 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 26 -
8 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 27 64 -
14 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 105 138 -
12 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 106 120 -
13 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 121 138 -
15 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 169 189 -
10 g8208.t5 MobiDBLite mobidb-lite consensus disorder prediction 172 189 -
2 g8208.t5 PANTHER PTHR46542 X-BOX BINDING PROTEIN 1 8 183 1.4E-20
1 g8208.t5 Pfam PF07716 Basic region leucine zipper 40 92 5.5E-7
6 g8208.t5 ProSitePatterns PS00036 Basic-leucine zipper (bZIP) domain signature. 46 61 -
16 g8208.t5 ProSiteProfiles PS50217 Basic-leucine zipper (bZIP) domain profile. 41 104 9.622
7 g8208.t5 SMART SM00338 brlzneu 39 103 3.8E-8
3 g8208.t5 SUPERFAMILY SSF57959 Leucine zipper domain 41 92 4.97E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values