General information for g8208.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8208 is located on chr_2: 29063524..29063916 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8208 | g8208.t6 | TTS | g8208.t6 | 29062286 | 29062286 |
| chr_2 | g8208 | g8208.t6 | isoform | g8208.t6 | 29062346 | 29063695 |
| chr_2 | g8208 | g8208.t6 | exon | g8208.t6.exon1 | 29062346 | 29063041 |
| chr_2 | g8208 | g8208.t6 | cds | g8208.t6.CDS1 | 29062458 | 29063012 |
| chr_2 | g8208 | g8208.t6 | exon | g8208.t6.exon2 | 29063228 | 29063695 |
| chr_2 | g8208 | g8208.t6 | TSS | g8208.t6 | 29063965 | 29063965 |
Sequences
>g8208.t6 Gene=g8208 Length=1164
ATGACAACAAAAATATTGGTACCGAGAATTCAAAGAGATTCTTCAGTCTCATCTTCAAAT
AGTGAGCTCACTATTCGAAGCACACCAGGAAGAAAACGCAAGCTCGACCACTTGACACAA
GAAGAGAAGGTGCAAAGAAAAAAATTGAAAAATCGAGTAGCAGCTCAAACATCTAGAGAC
AGAAAAAAGAAACAAATGGAAGAAATGCTCATCACAATCGAGAGACAAACAAAAGAATTA
TCACAATGGGAGCACAGATATAACCAGCTGAAAACAAAATATGATAAACTCGAGAGAGAA
GTTGCTAAATTAAAACAGGCAAATAAGAACAGTAACAATACCAAACAAGAATCTTTTAGC
AGAAATAGCATTCCAGAGGAGCACAAGTACACACGTTTATCACAAGAGGATATGCGAAAT
GAGGATTTCTCTGTTGGTTCTGTTATCATCAAATCTGAAGGACCTGCTAAAGCCTTGTCT
CCGAACTCCATTCAAACATGGAAATCAATTCTGCAACAGGCAATTGCGCAAATGCCAAAG
AAGACAGCAACGAATGCGAATTGTCTCGACCAATGGTGGACGAGCCAATGTCTTGGTCCA
GAAAATCGAGAATGGAATCCGCCAAAGATCGCCATAGAAGTTCATTAAAGCAACGTTCCA
GCTCAAAGCGACTACATGATGCAAAAACAAGCCATAATGGATCAGATAATGAAACATACA
ACGTGGATAAAATTTTTTACGATGATGAAATACCGGTTGTTAAAGACGAGTGTTTTGGAG
TCGAGGAGATGATTATTTGTGACGACAGTGAGGAAGATGATACTGATTGCTTAGATATTT
GTTCGAAATTCAAATCATCACCAGTTGATCGTTTAATTTCACCTATACCACACAGTGATT
ATGATGACATTAAAAGTCCACTGCACACAATTTCTGATGGCGGATATGAATCACAAGGAT
CACCTATATCACTAGATGAATTCACATCACTCAACGATCCACAAAATGATTTTGATCTTC
TTATAAATGACCTATTTCCTTCTTTAGTGTAAGCTATTTTATTCAAAACTAAATTAATTT
TAAGCTACATTATATTGTGTTAATTATTGTTGTATGTTTCATTAAGAATTTATTATATAA
ATTTATATTCTATCTAGGCTTTAG
>g8208.t6 Gene=g8208 Length=184
MEINSATGNCANAKEDSNECELSRPMVDEPMSWSRKSRMESAKDRHRSSLKQRSSSKRLH
DAKTSHNGSDNETYNVDKIFYDDEIPVVKDECFGVEEMIICDDSEEDDTDCLDICSKFKS
SPVDRLISPIPHSDYDDIKSPLHTISDGGYESQGSPISLDEFTSLNDPQNDFDLLINDLF
PSLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8208.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - |
| 3 | g8208.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - |
| 2 | g8208.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 67 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
