General information for g8208.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8208 is located on chr_2: 29063524..29063916 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8208 | g8208.t9 | isoform | g8208.t9 | 29062346 | 29063916 |
| chr_2 | g8208 | g8208.t9 | exon | g8208.t9.exon1 | 29062346 | 29063791 |
| chr_2 | g8208 | g8208.t9 | cds | g8208.t9.CDS1 | 29062458 | 29063012 |
| chr_2 | g8208 | g8208.t9 | TTS | g8208.t9 | 29063516 | 29063516 |
| chr_2 | g8208 | g8208.t9 | exon | g8208.t9.exon2 | 29063848 | 29063916 |
| chr_2 | g8208 | g8208.t9 | TSS | g8208.t9 | 29063965 | 29063965 |
Sequences
>g8208.t9 Gene=g8208 Length=1515
ATGTAGAGTTCAAAAATAAATCTTTTAATACCAAATCTGATTTCAAACTATCAAGAAGTG
ATTCTTATATATTTAAGGAAAAAAAGAAATCTTTTAAATAGTAGCTCTTTGCGTCACGTC
ATCAATTTTTCTACTCAATTTAAAAGAAAATTCTCGAAATCAAAAATGACAACAAAAATA
TTGGTACCGAGAATTCAAAGAGATTCTTCAGTCTCATCTTCAAATAGTGAGCTCACTATT
CGAAGCACACCAGGAAGAAAACGCAAGCTCGACCACTTGACACAAGAAGAGAAGGTGCAA
AGAAAAAAATTGAAAAATCGAGTAGCAGCTCAAACATCTAGAGACAGAAAAAAGAAACAA
ATGGAAGAAATGCTCATCACAATCGAGAGACAAACAAAAGAATTATCACAATGGGAGCAC
AGATATAACCAGCTGAAAACAAAATATGATAAACTCGAGAGAGAAGTTGCTAAATTAAAA
CAGGCAAATAAGAACAGTAACAATACCAAACAAGAATCTTTTAGCAGAAATAGCATTCCA
GAGGAGCACAAGTACACACGTTTATCACAAGAGGATATGCGAAATGAGGATTTCTCTGTT
GGTTCTGTTATCATCAAATCTGAAGGACCTGCTGTGTCCCAACCTCTGCCGAAGGTATTA
ATGATGAAAACAGAGACGACAGAAAAATCAGCAATCAAAGATTCTCAGAAGAAGAAAAAG
AACGATGTGAAGGCCTTATTGAAGGTAATAATGCTCTGCCTACTCTACAAGAACTCATCG
ATGGGATCAACTTCGAATACGATCTTGAAGAGCTTGCAGAAAGCCTTGTCTCCGAACTCC
ATTCAAACATGGAAATCAATTCTGCAACAGGCAATTGCGCAAATGCCAAAGAAGACAGCA
ACGAATGCGAATTGTCTCGACCAATGGTGGACGAGCCAATGTCTTGGTCCAGAAAATCGA
GAATGGAATCCGCCAAAGATCGCCATAGAAGTTCATTAAAGCAACGTTCCAGCTCAAAGC
GACTACATGATGCAAAAACAAGCCATAATGGATCAGATAATGAAACATACAACGTGGATA
AAATTTTTTACGATGATGAAATACCGGTTGTTAAAGACGAGTGTTTTGGAGTCGAGGAGA
TGATTATTTGTGACGACAGTGAGGAAGATGATACTGATTGCTTAGATATTTGTTCGAAAT
TCAAATCATCACCAGTTGATCGTTTAATTTCACCTATACCACACAGTGATTATGATGACA
TTAAAAGTCCACTGCACACAATTTCTGATGGCGGATATGAATCACAAGGATCACCTATAT
CACTAGATGAATTCACATCACTCAACGATCCACAAAATGATTTTGATCTTCTTATAAATG
ACCTATTTCCTTCTTTAGTGTAAGCTATTTTATTCAAAACTAAATTAATTTTAAGCTACA
TTATATTGTGTTAATTATTGTTGTATGTTTCATTAAGAATTTATTATATAAATTTATATT
CTATCTAGGCTTTAG
>g8208.t9 Gene=g8208 Length=184
MEINSATGNCANAKEDSNECELSRPMVDEPMSWSRKSRMESAKDRHRSSLKQRSSSKRLH
DAKTSHNGSDNETYNVDKIFYDDEIPVVKDECFGVEEMIICDDSEEDDTDCLDICSKFKS
SPVDRLISPIPHSDYDDIKSPLHTISDGGYESQGSPISLDEFTSLNDPQNDFDLLINDLF
PSLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8208.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - |
| 3 | g8208.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - |
| 2 | g8208.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 67 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
