General information for g8235.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 variant 2.
Parent gene
- The parent gene g8235 is located on chr_2: 29211433..29212531 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8235 | g8235.t6 | isoform | g8235.t6 | 29210689 | 29212531 |
| chr_2 | g8235 | g8235.t6 | exon | g8235.t6.exon1 | 29210689 | 29211573 |
| chr_2 | g8235 | g8235.t6 | TTS | g8235.t6 | 29210713 | 29210713 |
| chr_2 | g8235 | g8235.t6 | cds | g8235.t6.CDS1 | 29211433 | 29211573 |
| chr_2 | g8235 | g8235.t6 | exon | g8235.t6.exon2 | 29211638 | 29211763 |
| chr_2 | g8235 | g8235.t6 | cds | g8235.t6.CDS2 | 29211638 | 29211763 |
| chr_2 | g8235 | g8235.t6 | exon | g8235.t6.exon3 | 29211970 | 29212531 |
| chr_2 | g8235 | g8235.t6 | cds | g8235.t6.CDS3 | 29211970 | 29212014 |
| chr_2 | g8235 | g8235.t6 | TSS | g8235.t6 | 29212710 | 29212710 |
Sequences
>g8235.t6 Gene=g8235 Length=1573
ATGTCGTCGGGTGTCGGTAAGAATTTTTTCGATATTTTTTTCATTATTCAAATCCGGAAT
CACATTTTTTCTATTTGTCTGCAGAATATTGCAAAAAAAACATATGACTAATGAGGTCAT
ATATATTATTTTAATTGCATTTGAATTATGTATTAGACATGAAATTATCGATTTTACTTT
TATTGTGAATTTGATTTACACTTTCGCAAGTCAAGAGCAGCAAACAAGGGTCGTCGAAAG
AGAAGAAAAATTCCAAAAATTGTTTTTCTTCTTGCTCTGTCTCTCTCTCACTCTTTCTTA
TTTGTTACATTCGTTTGTTCTCCTTGTTTCAATTCAATTTCTATTAATTGGATTTCTTGT
TTCATCTGCTTTTTCTATAACAATTTATTTTACAAAAACCTCATGATCATCATCAATAGT
GGTTCCACGAAATTTTCGCTTGCTTGAAGAATTGGAAGCTGGTCAAAAAGGAGTTGGTGA
CGGTACAATTTCATGGGGACTAGAAAATGATGATGATATGACTTTGACTCACTGGACTGG
AATGATAATTGGGCCACCAAGAACTCCATACGAGAATAGAATATATTCATTAAAAATAGA
ATGCGGTAATCGTTATCCTGATGAGCCACCAACATTGAAATTTCTAACAAAAATCAATAT
AAATTGTATAAACAGTCAGTCTGGTGTGGTTGATCATAGATTAGTTCCAATCTTGGCACG
ATGGACCCGTGATTATACAATCAAATCAACACTGCAAGAAATTCGTAGAATTATGACGCT
TAAAGATAATTTAAAGCTCACGCAACCGCCAGAAGGATCATGCTTTTAAAGAGTTAGACA
GTGAATGAGAAAAGAAAGGACATACATAAACAAATGCTGTTAATTGTCTGAAAAACAAAA
AATATTGAAAACAAGATTATAGCAGTTTATCCAAATGAAAAGGAAAAATACATTTTTTGA
AAGAAGTAATACCTAATAATGATAAGAATATTAATTTGCTAACTTAAAGAATAATATTGC
CCCACACACATACGCTACACAAAATATTTTCACTTTTTTTTTTTTTTAAAAAAAAGAATG
CCATTTATTGCATTCGCTTATAGATGAAAATCCCTATCTTTTTCTTCAAATTTAATCGCC
AGCCCCTCCTGAATACAGTAAAAATCATTGAGAAATGAAATTATTATCATTCTTTCTCTT
TAAATCGAATTTTTCCACTTTTTAATGGTATAAGTAGGTTTTTGTTTCGTTCAGGACTTA
TTTATTTTAACGTCAATGATGTTTAAAAAAGAAAAAAAGATTTCTTAAAGTTAAACAAGA
TATCTCTCTCTTCTCACAAAAAAATATGAAATAAAATTAAACAACATAATGTATCATAAT
ATCCTTTATCCTTTTTTGGCATTAAAATTAATAATGTCTACAATTGATACATTTGATTTA
ATCACTATCAATAAAACATAAAAAAACTCATACACATCCTTATCATTTTTTATTTGAACT
AAGTATGTGAAAAAATAATAAAGTTTGCTTTAACGAAAGCATTTAAAAGAAAAACATTGA
GATTTTTTTCTAT
>g8235.t6 Gene=g8235 Length=103
MTLTHWTGMIIGPPRTPYENRIYSLKIECGNRYPDEPPTLKFLTKININCINSQSGVVDH
RLVPILARWTRDYTIKSTLQEIRRIMTLKDNLKLTQPPEGSCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8235.t6 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 103 | 0.0000 |
| 2 | g8235.t6 | PANTHER | PTHR24068:SF177 | UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2 | 2 | 97 | 0.0000 |
| 3 | g8235.t6 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 2 | 97 | 0.0000 |
| 1 | g8235.t6 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 3 | 89 | 0.0000 |
| 7 | g8235.t6 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 87 | 16.7410 |
| 5 | g8235.t6 | SMART | SM00212 | ubc_7 | 2 | 102 | 0.0089 |
| 4 | g8235.t6 | SUPERFAMILY | SSF54495 | UBC-like | 2 | 103 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
