General information for g8255.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as D-glucuronyl C5-epimerase B.
Parent gene
- The parent gene g8255 is located on chr_2: 29360667..29362948 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8255 | g8255.t2 | TSS | g8255.t2 | 29357318 | 29357318 |
| chr_2 | g8255 | g8255.t2 | isoform | g8255.t2 | 29357453 | 29359697 |
| chr_2 | g8255 | g8255.t2 | exon | g8255.t2.exon1 | 29357453 | 29357619 |
| chr_2 | g8255 | g8255.t2 | exon | g8255.t2.exon2 | 29358205 | 29358343 |
| chr_2 | g8255 | g8255.t2 | cds | g8255.t2.CDS1 | 29358226 | 29358343 |
| chr_2 | g8255 | g8255.t2 | exon | g8255.t2.exon3 | 29358996 | 29359697 |
| chr_2 | g8255 | g8255.t2 | cds | g8255.t2.CDS2 | 29358996 | 29359696 |
| chr_2 | g8255 | g8255.t2 | TTS | g8255.t2 | NA | NA |
Sequences
>g8255.t2 Gene=g8255 Length=1008
ATGTTTAGCTCACAAAAATCGAGCGAAAAAGTGAGTAAAAATTAATATAGAGAAACATTA
TTGTGTTCAATGATGAAAAAGGGAGGAAAAATTTATTTATTCAAAATACTTTTTCTCATT
TTCTGTGTTCACAATTATCATTTGAATTTCATCGTTCATGGCGATAGCATACAACGCTCT
TTTTGATCATGATGAGACTTAATTTGAAATATGTTCTTAGCAGTCTTATTTTAATGGTCA
CTTGCGTAACATTGATGCTGTGGCATCGTTGTGATTTTGTAAGAACATTTCCAAAAAGAT
TTTATGCAAATCAATATCAAGAAGAATCTGTTGAAATTGATTGTGTAATAAATCAAGAGT
ACTCAATAGCCTGTAGAAGAGAGGGAGATGAAGTTTATCTTCCTTTCTCATTCATTAAAA
AATATTTTGAAGTTTATGGTTCACTCAATACGATAGACGGCACTACGCATTTTGACTGGA
GTCATAGTTATGGTAAAGTAAATCTACCGCGCTCTATCTACGACTCAAAGGGTATCTTTA
TGTATTTTGAAAATTACAATGTTGAAGTAAGAGATAGAGTCAAATGTATAAGTGCGAGTG
CTGGAGTGCCAATTTCAATTCAATGGGAAAGTCAAGGTTATTTTTATGCTACACAAATTG
CCCAATTTGGCCTATCACACTATAGTAAAAATTTAACTGAACCGGAACCAACGAGAAAAA
TTATTGAAGATGCTGACCTTAATCAATATGCATGGATTACACCAAGAAATAGTTCAATAA
GTCGCAACTATTCTACCGATATTACAGGAGTCGTCAATTTTGCTACATCCAATCATATTG
ATAGCGCTATCTACTCTGAAATGGACCATGTCGTTGACCTCATTATGAGCATCGACCTAT
ACTTTCAACAAAATTCAAGTATGATGATAACAATGCAAAATCGTGAAAACCAGCAGCTGT
ATGTTCTACATTACATTCTTGCTGACCTTTCGATAACTGTGCAAGATG
>g8255.t2 Gene=g8255 Length=273
MMRLNLKYVLSSLILMVTCVTLMLWHRCDFVRTFPKRFYANQYQEESVEIDCVINQEYSI
ACRREGDEVYLPFSFIKKYFEVYGSLNTIDGTTHFDWSHSYGKVNLPRSIYDSKGIFMYF
ENYNVEVRDRVKCISASAGVPISIQWESQGYFYATQIAQFGLSHYSKNLTEPEPTRKIIE
DADLNQYAWITPRNSSISRNYSTDITGVVNFATSNHIDSAIYSEMDHVVDLIMSIDLYFQ
QNSSMMITMQNRENQQLYVLHYILADLSITVQD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8255.t2 | PANTHER | PTHR13174 | D-GLUCURONYL C5-EPIMERASE | 2 | 272 | 2.0E-86 |
| 5 | g8255.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 6 | g8255.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 25 | - |
| 4 | g8255.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 26 | 273 | - |
| 3 | g8255.t2 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 12 | - |
| 2 | g8255.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047464 | heparosan-N-sulfate-glucuronate 5-epimerase activity | MF |
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed