General information for g8255.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as D-glucuronyl C5-epimerase B.
Parent gene
- The parent gene g8255 is located on chr_2: 29360667..29362948 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8255 | g8255.t4 | isoform | g8255.t4 | 29359697 | 29360449 |
| chr_2 | g8255 | g8255.t4 | exon | g8255.t4.exon1 | 29359697 | 29360449 |
| chr_2 | g8255 | g8255.t4 | cds | g8255.t4.CDS1 | 29359796 | 29360449 |
| chr_2 | g8255 | g8255.t4 | TSS | g8255.t4 | NA | NA |
| chr_2 | g8255 | g8255.t4 | TTS | g8255.t4 | NA | NA |
Sequences
>g8255.t4 Gene=g8255 Length=753
GAAAATAACATTTACTATGGTCTTGGTACAAATGCTCTTGGCAAATGGAAGCACATCACA
CGAGATCTCTTTGTTGATGTACAAAAGGGTATAGCACTAATGTATATTAATCGAAAACAG
AAAATGCGAAGAAATGAATTTAAAGTTGTAAAAATTGCATTTATTGGAAATGGTTCTTTT
GACAATCTAACTCTTAGTACTTCTGAACATATTCAGCATTTTTATGATGCGGCTGAATGG
TTTGTACGAAATCAAAATCAGTCAACTGGAGGATTTGCCATTCCCGTTAGACGTCGTCTT
GCATCAGGCTTTGAAGATCTGAATCGTGGCTGGTTAAGTGCAATGGCCCAAGGACATGCT
ATTTCTCTTTTGTCAAGAGCTTTCTATCATTCAGGTGGAAACAGAAAGTATTTAAAAGCA
GCTGTGAATGCACTTAAACCCTTCAAACTTCCTTCATCACAAGGTGGAGTGCTTGCAAAG
TTTATGAATATTTTACCTTTTTATGAGGAGTATCCATCCTCACCAAGCTCTTTTGTTCTG
AATGGTTTTATATACTCTCTACTTGGCCTTTACGATCTACATCAAATTGCGCCAAAAACA
AAAGGCGGCAAAGAAGCTGGAATTTTATTTGATCAAGGCATGGAGTCACTCAAGAAAATG
ATTCCATTTTACGACACGGGTTCAGGAACAGTCTATGATTTGCGACACGTAACGCTCGGA
ACATCACCTAATATTGCACGCTGGGACTATCAT
>g8255.t4 Gene=g8255 Length=218
MYINRKQKMRRNEFKVVKIAFIGNGSFDNLTLSTSEHIQHFYDAAEWFVRNQNQSTGGFA
IPVRRRLASGFEDLNRGWLSAMAQGHAISLLSRAFYHSGGNRKYLKAAVNALKPFKLPSS
QGGVLAKFMNILPFYEEYPSSPSSFVLNGFIYSLLGLYDLHQIAPKTKGGKEAGILFDQG
MESLKKMIPFYDTGSGTVYDLRHVTLGTSPNIARWDYH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8255.t4 | PANTHER | PTHR13174 | D-GLUCURONYL C5-EPIMERASE | 6 | 218 | 0 |
| 1 | g8255.t4 | Pfam | PF06662 | D-glucuronyl C5-epimerase C-terminus | 53 | 218 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047464 | heparosan-N-sulfate-glucuronate 5-epimerase activity | MF |
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
