Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Luciferin sulfotransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8259 g8259.t1 isoform g8259.t1 29369104 29370245
chr_2 g8259 g8259.t1 exon g8259.t1.exon1 29369104 29369634
chr_2 g8259 g8259.t1 cds g8259.t1.CDS1 29369104 29369634
chr_2 g8259 g8259.t1 exon g8259.t1.exon2 29369695 29369827
chr_2 g8259 g8259.t1 cds g8259.t1.CDS2 29369695 29369827
chr_2 g8259 g8259.t1 exon g8259.t1.exon3 29369884 29369974
chr_2 g8259 g8259.t1 cds g8259.t1.CDS3 29369884 29369974
chr_2 g8259 g8259.t1 exon g8259.t1.exon4 29370029 29370245
chr_2 g8259 g8259.t1 cds g8259.t1.CDS4 29370029 29370245
chr_2 g8259 g8259.t1 TSS g8259.t1 NA NA
chr_2 g8259 g8259.t1 TTS g8259.t1 NA NA

Sequences

>g8259.t1 Gene=g8259 Length=972
ATGTTTGAATCAGAACTTTTAACAAACGAAGTGGTGAAAAAAATTGATTGTCCAGGCTGT
TTCGATCATTCTATTGTGTCGTTGAAAAATGATAAAAGCGGACGCTCATGTGTAATGATT
AACAAATATATGGATTTATTTGCTGAAAGAGTGAAAAACATGAAAGTTTTTGACGACGAT
GTTTGGGTGATTTCTTTTCCAAAATGTGGAACAACTTGGTGTCAGGAAATGGTATGGTTA
ATCAATAATGATTTGGATTATGAAAGTGCTCTTGAAACTAATTTGAATGTTCGATTTCCT
TTTCTTGAATTAAATGGAGTTTTAAACAAGTTCAATGGTGATTCTGTAGGAATTTGTGAA
AATCAATCTCGTCCTAGACATATCAAATCTCATTTGCCAATTTTTTTATTGCCACATGAA
ATGTTTGATGTGAATCCTAAAATAATTTATATAGCACGCAATCCGTTGGATGTAGCAACA
TCCTTTTTTCATCACTATACACATATCGTTGGTTATGAAGGAACAAGAGAAGATTTTGTG
GAAGCATTCTTGAGTAATCAAGTTATTTATGCTCCATTTAATGAACACGTGTTGGATTTT
TGGAAAATTCGAACAAAACCAAATGTCTTATTTTTGTTTTATGAAGATATGAAACGTAAA
ATGCCAAATGTTGTTAAAGAGACAATGACATTTTTGGGAAAAAAATTTTCAAATGATCAA
ATAAATAAACTTTGTGAGCATCTTTCAATAAAGTCAATGAGAGCAAATGCTTCATGCAAT
AACATCAGTCTGGTTGAAATGGCACAAAAACTCAATGGTAAGTCATCAAATAATATAAAA
TTTCAATTTATAAGGAAAGGAGAAATCGGTACGTTCAAAGATGAGAAGTTTGGAGAAAAA
ATCAGTGCAAAATTGGATGCTTTCATTAAGCAACCTTCACTCATCATCAATAATTTTGCA
TACAAATTTTGA

>g8259.t1 Gene=g8259 Length=323
MFESELLTNEVVKKIDCPGCFDHSIVSLKNDKSGRSCVMINKYMDLFAERVKNMKVFDDD
VWVISFPKCGTTWCQEMVWLINNDLDYESALETNLNVRFPFLELNGVLNKFNGDSVGICE
NQSRPRHIKSHLPIFLLPHEMFDVNPKIIYIARNPLDVATSFFHHYTHIVGYEGTREDFV
EAFLSNQVIYAPFNEHVLDFWKIRTKPNVLFLFYEDMKRKMPNVVKETMTFLGKKFSNDQ
INKLCEHLSIKSMRANASCNNISLVEMAQKLNGKSSNNIKFQFIRKGEIGTFKDEKFGEK
ISAKLDAFIKQPSLIINNFAYKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8259.t1 Gene3D G3DSA:3.40.50.300 - 20 313 0
2 g8259.t1 PANTHER PTHR11783 SULFOTRANSFERASE SULT 30 310 0
3 g8259.t1 PANTHER PTHR11783:SF180 GH11818P-RELATED 30 310 0
1 g8259.t1 Pfam PF00685 Sulfotransferase domain 58 311 0
4 g8259.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 45 308 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed