General information for g8264.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8264 is located on chr_2: 29390010..29395003 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8264 | g8264.t3 | isoform | g8264.t3 | 29389639 | 29395003 |
| chr_2 | g8264 | g8264.t3 | exon | g8264.t3.exon1 | 29389639 | 29390863 |
| chr_2 | g8264 | g8264.t3 | cds | g8264.t3.CDS1 | 29389639 | 29390010 |
| chr_2 | g8264 | g8264.t3 | exon | g8264.t3.exon2 | 29394933 | 29395003 |
| chr_2 | g8264 | g8264.t3 | TSS | g8264.t3 | 29394997 | 29394997 |
| chr_2 | g8264 | g8264.t3 | TTS | g8264.t3 | NA | NA |
Sequences
>g8264.t3 Gene=g8264 Length=1296
GGTTTAATATGTTTCGCGAATCGGTTCTTCGTGTTTTCCCAAAGAATTTTTTTATTTTGC
GATTTTAAGCAGCGATCGAGGTTAAATTTATTTTTATTTACTCTCAAATAAGAAAATTTG
TCATCGCAACGCCGCACAGCAGTGGAGAAAAAGAAGAATTTTAAAGCAATAAAAATAAAT
GGATAGCATCACAAATGACTCATCCATAAATATATAGTGCAATTTTTCCGATGAAAAATG
GTGAAAAACATTCTCAGTCATTGATAAAAATATAGAAAAAGAGACACAAAAAGTGAAAAG
GTAAAAAAGATTTGAAAAGTCATTTATTCACTACACAAACACACATCGGCAAAAGTGAAA
AAGGAAGGAAAAATCCACATAAATGAAAATTAATGTTTAAAAATAGAAAAAAATCGCTCG
AAACGGCGATTGTGAATTTCGGTTTTGGTGTTTTTTTTTTCTTAAAAAGCTGTAATTTTT
AGAAGTTGAAAAATACATCTTGTTTAAACCAATTAATTCGATTCAAGTGAAAAATCTCCG
CTCGCGCACACACGAGAGGAAAATGCCAAAATTTCCCAAGCTGACACAGTAGCAGGAAAA
CACACGATAGTGTGCTAGTGACGAGAGAGGAAAATATTAAATAGATCGTGTGAGAGAATG
TCACATAAATGAATTTAAAAGAAAGTAACCAAAAATAAATGATAAAAACAGAAGAAACTT
CACTGTGACTTTAGACGTAAACTTTAATTAGTGCCGTCGCCGAAAAAAGAAAATAAAAAG
AAAAATTCTAAAATTATACATAAAAACACACATTTACAGCGGGAGTAGTAGTACATAGTA
GAAACAACAAGTGATCTTTTGCAAAAGAAAAAAAAGATTTATTTGACTATAAGTATTCAT
AATAATCATTAATCAACGTGAGATATGGAACCGCCGCGTGAAAATTCACCATCAACACCA
TCAAGATATCTCAATAGTTATCTTCAGCAGAATCCAACTGAGCTCTTTCATCAAAACTTT
CCTCAACGTCAATTATCGAATCAACAGTTTTATGCTGCAGCGGCTGCTGCTGATAATCTC
TCAACAAACAATAAAAGCTATTTAAAACGTCATCATCAAAATTATGAGAAAAATGACGGT
GAACGAGATAAGAAATATGAAAAATATGATAGCAAAAAACTAGAAGAACAAAGCATTCAT
CAAACGCAAGGACATCCGTATGACGGATTTCATAGTGACGCTTACACGACAAGTGGAGGA
AATGGTGCTGGTAGTATAACAACATCAACTGGAACG
>g8264.t3 Gene=g8264 Length=124
MEPPRENSPSTPSRYLNSYLQQNPTELFHQNFPQRQLSNQQFYAAAAAADNLSTNNKSYL
KRHHQNYEKNDGERDKKYEKYDSKKLEEQSIHQTQGHPYDGFHSDAYTTSGGNGAGSITT
STGT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8264.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 99 | - |
| g8264.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 91 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
