General information for g8265.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serum response factor .
Parent gene
- The parent gene g8265 is located on chr_2: 29406406..29408261 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8265 | g8265.t7 | isoform | g8265.t7 | 29403077 | 29408261 |
| chr_2 | g8265 | g8265.t7 | exon | g8265.t7.exon1 | 29403077 | 29403373 |
| chr_2 | g8265 | g8265.t7 | cds | g8265.t7.CDS1 | 29403113 | 29403373 |
| chr_2 | g8265 | g8265.t7 | exon | g8265.t7.exon2 | 29406402 | 29406689 |
| chr_2 | g8265 | g8265.t7 | cds | g8265.t7.CDS2 | 29406402 | 29406443 |
| chr_2 | g8265 | g8265.t7 | exon | g8265.t7.exon3 | 29408017 | 29408134 |
| chr_2 | g8265 | g8265.t7 | exon | g8265.t7.exon4 | 29408194 | 29408261 |
| chr_2 | g8265 | g8265.t7 | TTS | g8265.t7 | 29408448 | 29408448 |
| chr_2 | g8265 | g8265.t7 | TSS | g8265.t7 | NA | NA |
Sequences
>g8265.t7 Gene=g8265 Length=771
GCCTATGAATTATCGACACTGACAGGCACACAGATAATGTTACTTGTTGCATCGGAAACG
GGTCATGTATACACTTTTGCCACACGCAAGCTTCAACCGATGATCACATCGGATGCGGGC
AAGCAACTTATACAGACATGTCTGAATTCTCCAGAAAATGCAGAAGCAGTAACTACAAAC
AATAACAACACTGGTACGATTGTAAATGAACAACGCATGTCAGCGACAGGTTTTGAGGAA
ACTGAACTAACTTTCGATGTACAAGAGCTGAATAGTGATATTCCAGAAAAGCAAAAATTC
CTTTTCCCAATCGATTTTGACTTGAGCGATTTCCTATGAATAAGGAATGATAGAAAAATT
CTTTGCTGGAATTTGAAAAAATTACAAAATAACTTCAATTTATCATGTAGATTTAGTGCG
TTTAGTTATTCACATTATGGTATTCAATTCGACACTGATAGAACATATATATCCAAAGGA
TAGAACGCACTAAAATCTAAGCCAAAAGTTTTAATTCAAAAAGGGTCTCAATTTATATAT
ATTTAATTTTTTAAGTTTTATAAGCGGAATAATTGATCCTTTGTGTGGAATGTAAGCGAT
TATTTGTTGAAAGGACTAATCAGAATGAGCAGCTGTAATGCAAAATTTTGGCTTATAGAT
ATAATCAAACATTTTAGTAGTCACGTGTTAATAAAAATTTGGCAAAAAAATAAAAATTTG
AACTTACTGAATATGAAAACGATAAGAGTCATCAAAATAAAAAAAAAATGA
>g8265.t7 Gene=g8265 Length=100
MLLVASETGHVYTFATRKLQPMITSDAGKQLIQTCLNSPENAEAVTTNNNNTGTIVNEQR
MSATGFEETELTFDVQELNSDIPEKQKFLFPIDFDLSDFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8265.t7 | Gene3D | G3DSA:3.40.1810.10 | - | 1 | 40 | 0 |
| 1 | g8265.t7 | PANTHER | PTHR48019 | SERUM RESPONSE FACTOR HOMOLOG | 1 | 87 | 0 |
| 2 | g8265.t7 | PANTHER | PTHR48019:SF40 | SERUM RESPONSE FACTOR | 1 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0046983 | protein dimerization activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed