General information for g8269.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8269 is located on chr_2: 29416581..29417489 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8269 | g8269.t13 | TTS | g8269.t13 | 29416557 | 29416557 |
| chr_2 | g8269 | g8269.t13 | isoform | g8269.t13 | 29416581 | 29417489 |
| chr_2 | g8269 | g8269.t13 | exon | g8269.t13.exon1 | 29416581 | 29417314 |
| chr_2 | g8269 | g8269.t13 | cds | g8269.t13.CDS1 | 29416581 | 29416928 |
| chr_2 | g8269 | g8269.t13 | exon | g8269.t13.exon2 | 29417370 | 29417489 |
| chr_2 | g8269 | g8269.t13 | TSS | g8269.t13 | 29417511 | 29417511 |
Sequences
>g8269.t13 Gene=g8269 Length=854
ATGGAAGAAGACAAATTTTTAAACATTTCTGATTCTCATCAAATTGATATAAAAGTATTA
ATAAAAACCTTGCAAGATATAAAATTACTACGTGAGAATTTTCCGGACATTTTAATTGAA
AAGTCGTTTTAGAAGTTCAAAATAAGGACAATCGATGGAAAATAATAAGACATAATTTAC
CCGAAAGCGCTACAATTAATAACTTGAAAGTTGAATCATTGAAAAGCATTGTGGACAATT
TCTTAATTATTAGTAATAACTTATATCCATATTTCAAAGTCATTGATTGTCTACAAAATT
CATGCAAGATTATTGCACCAGAACATGATAAAAGAGATGTGAAATTATGGAGATTACTCA
AATACGATAAATTTACATCGATTAAAGTCGTTTTCAAAAATCCATTTGACATCAATGATA
CAGGCATAACATTTTATGGTAAAGAGCATTCAGTACAATCATTACTTAATACATATAATA
GCAGCAATGAACAAGAAACAAAAGATATGGATGTAGATTCATTGACAGCGGATGATGAAT
TTCAAGATATTTATCGCGACATTTGTAATAGACTTGATATAATTGACTTTCCATCAGTCG
AAAATAATGAGATCAATGAAGAAAATGAATGTGCTATTTGCCTTAGCTATGAAGATGAAT
TCAACCAATTGCCTTTCGTGTGCTGTGATAATTCAAAATGCGAATGCCTTTTTCATGTGT
TGTGCTTAAACAAACATCTGAGTATCAAAAACACCACTGTTCTTACTACTCGTTTAGCTA
TATGTCCATTTTGCAAGCAAAAAATTTCATCAAATTTTCTCAATCTTTTACAAAATGTTA
ATTTATTTGATTAA
>g8269.t13 Gene=g8269 Length=115
MDVDSLTADDEFQDIYRDICNRLDIIDFPSVENNEINEENECAICLSYEDEFNQLPFVCC
DNSKCECLFHVLCLNKHLSIKNTTVLTTRLAICPFCKQKISSNFLNLLQNVNLFD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8269.t13 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 25 | 106 | 0.0e+00 |
| 1 | g8269.t13 | Pfam | PF11793 | FANCL C-terminal domain | 39 | 104 | 0.0e+00 |
| 4 | g8269.t13 | SMART | SM01197 | FANCL_C_2 | 38 | 105 | 4.0e-07 |
| 3 | g8269.t13 | SMART | SM00249 | PHD_3 | 41 | 97 | 2.5e-03 |
| 2 | g8269.t13 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 38 | 100 | 5.0e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
