General information for g8273.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha.
Parent gene
- The parent gene g8273 is located on chr_2: 29434780..29435490 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8273 | g8273.t3 | TSS | g8273.t3 | 29428873 | 29428873 |
| chr_2 | g8273 | g8273.t3 | isoform | g8273.t3 | 29429047 | 29430540 |
| chr_2 | g8273 | g8273.t3 | exon | g8273.t3.exon1 | 29429047 | 29429167 |
| chr_2 | g8273 | g8273.t3 | cds | g8273.t3.CDS1 | 29429047 | 29429167 |
| chr_2 | g8273 | g8273.t3 | exon | g8273.t3.exon2 | 29429897 | 29429931 |
| chr_2 | g8273 | g8273.t3 | cds | g8273.t3.CDS2 | 29429897 | 29429931 |
| chr_2 | g8273 | g8273.t3 | exon | g8273.t3.exon3 | 29429990 | 29430169 |
| chr_2 | g8273 | g8273.t3 | cds | g8273.t3.CDS3 | 29429990 | 29430169 |
| chr_2 | g8273 | g8273.t3 | exon | g8273.t3.exon4 | 29430350 | 29430540 |
| chr_2 | g8273 | g8273.t3 | cds | g8273.t3.CDS4 | 29430350 | 29430538 |
| chr_2 | g8273 | g8273.t3 | TTS | g8273.t3 | NA | NA |
Sequences
>g8273.t3 Gene=g8273 Length=527
ATGGCTACAGTAGAAAAAATTGATAAAATTGAAAAGATTCAGCCTCACGACGATGTTTCA
ACTTCAAGAGCCTCAGAACAAACTGGAACAACAAAAGAGTCCGAAACAGCATCGGAAAGT
GCGAGAACTGCTGGAGATAGGAGTGCCATAAATGAGACGTTATCAGATGGCACCAGAGGA
AGTGGTGTCAACAGCTCGATGGCTGCAAGGACAGCAAAATCTGACAAAGAAAAGAAAATT
GGTCATCGAAGGGTTGGTGAAGATGGTGAAATCACTTATAAAAAGATCCAAACGAGCACT
ATTATGGGCTCAATTCAATTAGGCATACAACACACGGTTGGAAGTTTAGCCTCCAAACCG
AAACGTGATTTGCTAATGATGGACTTCTGGGAAATGGAAACAATTTCATTTCCGCCTGAA
GGATCAAGTATGACACCCGCTCATCATTATAGTGAATTTAGATTCAAAATTTATGCTCCT
ATCGCCTTCCGGTATTTTCGAGATTTATTTGGAATACAACCAGACGA
>g8273.t3 Gene=g8273 Length=175
MATVEKIDKIEKIQPHDDVSTSRASEQTGTTKESETASESARTAGDRSAINETLSDGTRG
SGVNSSMAARTAKSDKEKKIGHRRVGEDGEITYKKIQTSTIMGSIQLGIQHTVGSLASKP
KRDLLMMDFWEMETISFPPEGSSMTPAHHYSEFRFKIYAPIAFRYFRDLFGIQPD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8273.t3 | Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 95 | 175 | 2.3E-23 |
| 6 | g8273.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - |
| 7 | g8273.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - |
| 5 | g8273.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 70 | - |
| 8 | g8273.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 86 | - |
| 2 | g8273.t3 | PANTHER | PTHR23086:SF101 | LP03320P-RELATED | 32 | 175 | 5.7E-61 |
| 3 | g8273.t3 | PANTHER | PTHR23086 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | 32 | 175 | 5.7E-61 |
| 1 | g8273.t3 | Pfam | PF01979 | Amidohydrolase family | 38 | 134 | 5.2E-5 |
| 4 | g8273.t3 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 94 | 174 | 3.47E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
