General information for g8279.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 614.
Parent gene
- The parent gene g8279 is located on chr_2: 29536635..29538753 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8279 | g8279.t2 | TTS | g8279.t2 | 29534904 | 29534904 |
| chr_2 | g8279 | g8279.t2 | isoform | g8279.t2 | 29535109 | 29537945 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon1 | 29535109 | 29535342 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS1 | 29535109 | 29535342 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon2 | 29535404 | 29535924 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS2 | 29535404 | 29535924 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon3 | 29535984 | 29536561 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS3 | 29535984 | 29536561 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon4 | 29536635 | 29537278 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS4 | 29536635 | 29537278 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon5 | 29537341 | 29537465 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS5 | 29537341 | 29537465 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon6 | 29537615 | 29537806 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS6 | 29537615 | 29537806 |
| chr_2 | g8279 | g8279.t2 | exon | g8279.t2.exon7 | 29537870 | 29537945 |
| chr_2 | g8279 | g8279.t2 | cds | g8279.t2.CDS7 | 29537870 | 29537945 |
| chr_2 | g8279 | g8279.t2 | TSS | g8279.t2 | 29538753 | 29538753 |
Sequences
>g8279.t2 Gene=g8279 Length=2370
ATGATTAATCGGCGTATGATTCTTGTAAGCGATGGTCAGAATACTGGCCAACATCGAGTC
ATTACGTCTAGTGGAGGAAATACAATATTAGATGGAAAAACGCAAACCGTTTACACAACA
AGTGATAAGACTACACATTTCATGAGTCCTATAGGATCACTTCAATTGACTGCCGAAGAA
TGTAATGAAATTTTAATGAAACGTGCAGTTGCTGCAGTACAAAATCAGCAAGCAATTACC
ACAACGGCCTCAGATTCGCATAGTGCACCAATATCAATTCAAGTTCAGAAGGTCCTACAA
ACACTAGAAGACAGTGACGAACAACAGTTAACTCATTGCAAAATGGAACCAAATATGAGT
TCATCACCAAAATTGGAAACGATTGAAATTGTCCATTTTGAAACTGCAGAAGACACGAAA
CCGATAATTCATAAAACACGCAAGAATGATCCAGGAAGTAGTAAAGAACGTCCTTATGCT
TGTGAACAATGTGGCAAAACATTTTTATTAAAACATCATTTGACAACTCATGCTCGAAGT
CATACAGGAGAGCGTCCACACGTTTGTCCTCATTGCGGAAAAGATTTTAGCCATAAACAC
TGCTTAAACACTCATTTACTGTTGCATACAACTGAACGGCCATATCAATGTGGAGAGTGT
AAAAAATGTTTTACTTTAAAACATCACTTGTTGACACATTTAAGGGTTCATACTCGCGAT
CGTCCATTTGTATGCCAAGAATGTGGTCGATCTTTTCCATTGAAACGTCATTTAGTAACA
CACAGCAAGTTTCATGCTGGCGAGAGGCCTTATATTTGTGATGATTGTGGAGAAAGCTTT
TCACAGAAAGAACATTTAGATATGCATTCAAGATTCCATGGATCTGTGAATCCATTTGCA
TGTAACGATTGCGGTGCCACATTTGCTCGTAAATTTCAATTGATAAATCATGGGAAATTG
CATGGTAGAGTTCCACATTCTTGTACTGTTTGTGGTCGGGAATTTTTGCAAAAACGCACA
TTAGCAACTCATATGAAGACTCATACGGGTGAAGCTTCATTTCCATGTCTTGCTTGTGGT
GAAGGATATGCATCGAAAGCTGAATTGAATGCACATAATCGACTAGTACATGGCGGATTA
AATCCAAATGCTCCAAACACAACAATTGTTACAAATAAAACGGCCACGGTTATTCAACAG
CAGCAATCTCAAGCGCAACAGAATGCTGCACAGCAAGCTGCTCATCATCAACAAGCCCAG
CAGCAAGCAGCTGCACAACAACAGGCTCAACAGCAAGCGGCCGCTCAACAAGCTGCAGCT
GTTCAAGCTCAACAGCAGCAACAACAACAGCAAATTGAAGTACAACATATTCAACAGCAG
CAACAACCACAAACTGTGACAGTTGTTGGCAATCCAAATATTCTAACTGCCACAATCAGT
GGCGAAACACCACCTCGTCTTCAATACGCTTGTCGTGAATGTGGAAGCGTTTTCAATAGT
CGTGAAGGACTTGCATTGCATCTTCGACTACATTCAGGCGATAAAAGTCTTATTAATGAT
TTGTGTGCACTCACTGCCTCAATTCCTGGTCATCTCTTCCAGGGTGTTAATCAAATTAAT
TTACCAACGGGAACAACTTTTGTGACTACACCAGGAGCATCATCATCTCCGGTTCCAGTT
CAAATAATCACTTCTACTGGTGAAGTTGTAAATCAAATTCTTCAAAGTCCTACGCATACG
ACTCAGCAACATCAACAAATTCAAATACAAGCTCAGCCTCAACAACAGACAGCTCAAGTG
AAACAGCATATTGTTCAGCAACAGGCTGTTCAAGTTCAACAGCAGCCTCAACAAAATCAA
GCTCAACAGCAAGTGCAGCAAGCTACAGTTGTTCAAATCACATCACCGCCTCAGCAGAAG
GCCAAAACACACTTCTGTCAATTTTGTGGAAAGAGCTTCGTTGCTAAACATGGGCTTATG
CTTCATAATAAACGTCATCCCGATGGAAGTTGTACTTTACGTTCACATGTATGTCCCGAA
TGTGGCAAAGCTTTCCTTCAAAAGAACCATCTTATTCTTCATCAACGACAGCATTTAGAA
CAAAATCGTGGTGGTAAATCAAATCAACAACAACAAATTGAAGGACAAGCACAAGCTCAA
ACACAACAAAATGGTGATCAATTAGCACAACAAGGACAACAACAAATTACAATTCAACAA
TCGGCACAGGGTCAAGCTCAACAAGCTGGACAGCAAATTCAATTAGCGACAAGAAATGTT
CTCATGTCAAATCAACCAGTACTTCAAGTTCTACCTGATGGTGGGACATGGGTAAAATAT
GAGATTATACAATCAGATCCAATGGAATAG
>g8279.t2 Gene=g8279 Length=789
MINRRMILVSDGQNTGQHRVITSSGGNTILDGKTQTVYTTSDKTTHFMSPIGSLQLTAEE
CNEILMKRAVAAVQNQQAITTTASDSHSAPISIQVQKVLQTLEDSDEQQLTHCKMEPNMS
SSPKLETIEIVHFETAEDTKPIIHKTRKNDPGSSKERPYACEQCGKTFLLKHHLTTHARS
HTGERPHVCPHCGKDFSHKHCLNTHLLLHTTERPYQCGECKKCFTLKHHLLTHLRVHTRD
RPFVCQECGRSFPLKRHLVTHSKFHAGERPYICDDCGESFSQKEHLDMHSRFHGSVNPFA
CNDCGATFARKFQLINHGKLHGRVPHSCTVCGREFLQKRTLATHMKTHTGEASFPCLACG
EGYASKAELNAHNRLVHGGLNPNAPNTTIVTNKTATVIQQQQSQAQQNAAQQAAHHQQAQ
QQAAAQQQAQQQAAAQQAAAVQAQQQQQQQQIEVQHIQQQQQPQTVTVVGNPNILTATIS
GETPPRLQYACRECGSVFNSREGLALHLRLHSGDKSLINDLCALTASIPGHLFQGVNQIN
LPTGTTFVTTPGASSSPVPVQIITSTGEVVNQILQSPTHTTQQHQQIQIQAQPQQQTAQV
KQHIVQQQAVQVQQQPQQNQAQQQVQQATVVQITSPPQQKAKTHFCQFCGKSFVAKHGLM
LHNKRHPDGSCTLRSHVCPECGKAFLQKNHLILHQRQHLEQNRGGKSNQQQQIEGQAQAQ
TQQNGDQLAQQGQQQITIQQSAQGQAQQAGQQIQLATRNVLMSNQPVLQVLPDGGTWVKY
EIIQSDPME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 26 | g8279.t2 | Coils | Coil | Coil | 416 | 460 | - |
| 22 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 151 | 183 | 2.0E-12 |
| 24 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 184 | 211 | 4.3E-11 |
| 25 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 212 | 237 | 5.1E-11 |
| 18 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 238 | 267 | 4.8E-10 |
| 21 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 268 | 324 | 3.9E-17 |
| 17 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 325 | 347 | 6.0E-9 |
| 19 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 348 | 465 | 5.9E-6 |
| 23 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 481 | 516 | 1.6E-5 |
| 20 | g8279.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 611 | 702 | 3.6E-10 |
| 47 | g8279.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 726 | - |
| 48 | g8279.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 726 | - |
| 5 | g8279.t2 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 69 | 375 | 6.5E-126 |
| 8 | g8279.t2 | PANTHER | PTHR23226:SF270 | ZINC FINGER PROTEIN 684 | 69 | 375 | 6.5E-126 |
| 6 | g8279.t2 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 222 | 424 | 6.5E-126 |
| 9 | g8279.t2 | PANTHER | PTHR23226:SF270 | ZINC FINGER PROTEIN 684 | 222 | 424 | 6.5E-126 |
| 7 | g8279.t2 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 488 | 731 | 6.5E-126 |
| 10 | g8279.t2 | PANTHER | PTHR23226:SF270 | ZINC FINGER PROTEIN 684 | 488 | 731 | 6.5E-126 |
| 4 | g8279.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 215 | 237 | 0.013 |
| 2 | g8279.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 271 | 293 | 0.0026 |
| 1 | g8279.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 299 | 321 | 0.003 |
| 3 | g8279.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 676 | 698 | 0.0069 |
| 28 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 161 | 181 | - |
| 30 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 189 | 209 | - |
| 35 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 217 | 237 | - |
| 31 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 245 | 265 | - |
| 34 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 273 | 293 | - |
| 29 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 328 | 348 | - |
| 27 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 356 | 377 | - |
| 32 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 491 | 511 | - |
| 33 | g8279.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 678 | 698 | - |
| 55 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 159 | 186 | 16.893 |
| 57 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 187 | 214 | 13.817 |
| 53 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 215 | 242 | 15.064 |
| 59 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 243 | 270 | 15.667 |
| 54 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 271 | 298 | 13.588 |
| 49 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 299 | 321 | 10.907 |
| 50 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 326 | 353 | 13.734 |
| 58 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 354 | 382 | 12.3 |
| 52 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 489 | 516 | 14.274 |
| 51 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 644 | 666 | 9.806 |
| 56 | g8279.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 676 | 703 | 12.736 |
| 40 | g8279.t2 | SMART | SM00355 | c2h2final6 | 159 | 181 | 0.044 |
| 44 | g8279.t2 | SMART | SM00355 | c2h2final6 | 187 | 209 | 0.35 |
| 42 | g8279.t2 | SMART | SM00355 | c2h2final6 | 215 | 237 | 0.12 |
| 39 | g8279.t2 | SMART | SM00355 | c2h2final6 | 243 | 265 | 0.035 |
| 43 | g8279.t2 | SMART | SM00355 | c2h2final6 | 271 | 293 | 0.014 |
| 36 | g8279.t2 | SMART | SM00355 | c2h2final6 | 299 | 321 | 0.89 |
| 45 | g8279.t2 | SMART | SM00355 | c2h2final6 | 326 | 348 | 0.0025 |
| 38 | g8279.t2 | SMART | SM00355 | c2h2final6 | 354 | 377 | 0.61 |
| 46 | g8279.t2 | SMART | SM00355 | c2h2final6 | 489 | 511 | 0.0034 |
| 37 | g8279.t2 | SMART | SM00355 | c2h2final6 | 644 | 666 | 0.6 |
| 41 | g8279.t2 | SMART | SM00355 | c2h2final6 | 676 | 698 | 0.0016 |
| 15 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 155 | 205 | 3.0E-15 |
| 14 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 224 | 280 | 1.67E-17 |
| 13 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 265 | 317 | 7.67E-15 |
| 16 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 322 | 372 | 7.44E-12 |
| 12 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 488 | 532 | 2.43E-6 |
| 11 | g8279.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 642 | 698 | 1.27E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
