General information for g8279.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 300.
Parent gene
- The parent gene g8279 is located on chr_2: 29536635..29538753 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8279 | g8279.t4 | isoform | g8279.t4 | 29536552 | 29537945 |
| chr_2 | g8279 | g8279.t4 | exon | g8279.t4.exon1 | 29536552 | 29536561 |
| chr_2 | g8279 | g8279.t4 | cds | g8279.t4.CDS1 | 29536552 | 29536561 |
| chr_2 | g8279 | g8279.t4 | exon | g8279.t4.exon2 | 29536635 | 29537278 |
| chr_2 | g8279 | g8279.t4 | cds | g8279.t4.CDS2 | 29536635 | 29537278 |
| chr_2 | g8279 | g8279.t4 | exon | g8279.t4.exon3 | 29537341 | 29537465 |
| chr_2 | g8279 | g8279.t4 | cds | g8279.t4.CDS3 | 29537341 | 29537465 |
| chr_2 | g8279 | g8279.t4 | exon | g8279.t4.exon4 | 29537615 | 29537806 |
| chr_2 | g8279 | g8279.t4 | cds | g8279.t4.CDS4 | 29537615 | 29537806 |
| chr_2 | g8279 | g8279.t4 | exon | g8279.t4.exon5 | 29537870 | 29537945 |
| chr_2 | g8279 | g8279.t4 | cds | g8279.t4.CDS5 | 29537870 | 29537945 |
| chr_2 | g8279 | g8279.t4 | TSS | g8279.t4 | 29538753 | 29538753 |
| chr_2 | g8279 | g8279.t4 | TTS | g8279.t4 | NA | NA |
Sequences
>g8279.t4 Gene=g8279 Length=1047
ATGATTAATCGGCGTATGATTCTTGTAAGCGATGGTCAGAATACTGGCCAACATCGAGTC
ATTACGTCTAGTGGAGGAAATACAATATTAGATGGAAAAACGCAAACCGTTTACACAACA
AGTGATAAGACTACACATTTCATGAGTCCTATAGGATCACTTCAATTGACTGCCGAAGAA
TGTAATGAAATTTTAATGAAACGTGCAGTTGCTGCAGTACAAAATCAGCAAGCAATTACC
ACAACGGCCTCAGATTCGCATAGTGCACCAATATCAATTCAAGTTCAGAAGGTCCTACAA
ACACTAGAAGACAGTGACGAACAACAGTTAACTCATTGCAAAATGGAACCAAATATGAGT
TCATCACCAAAATTGGAAACGATTGAAATTGTCCATTTTGAAACTGCAGAAGACACGAAA
CCGATAATTCATAAAACACGCAAGAATGATCCAGGAAGTAGTAAAGAACGTCCTTATGCT
TGTGAACAATGTGGCAAAACATTTTTATTAAAACATCATTTGACAACTCATGCTCGAAGT
CATACAGGAGAGCGTCCACACGTTTGTCCTCATTGCGGAAAAGATTTTAGCCATAAACAC
TGCTTAAACACTCATTTACTGTTGCATACAACTGAACGGCCATATCAATGTGGAGAGTGT
AAAAAATGTTTTACTTTAAAACATCACTTGTTGACACATTTAAGGGTTCATACTCGCGAT
CGTCCATTTGTATGCCAAGAATGTGGTCGATCTTTTCCATTGAAACGTCATTTAGTAACA
CACAGCAAGTTTCATGCTGGCGAGAGGCCTTATATTTGTGATGATTGTGGAGAAAGCTTT
TCACAGAAAGAACATTTAGATATGCATTCAAGATTCCATGGATCTGTGAATCCATTTGCA
TGTAACGATTGCGGTGCCACATTTGCTCGTAAATTTCAATTGATAAATCATGGGAAATTG
CATGGTAGAGTTCCACATTCTTGTACTGTTTGTGGTCGGGAATTTTTGCAAAAACGCACA
TTAGCAACTCATATGAAGACTCATACG
>g8279.t4 Gene=g8279 Length=349
MINRRMILVSDGQNTGQHRVITSSGGNTILDGKTQTVYTTSDKTTHFMSPIGSLQLTAEE
CNEILMKRAVAAVQNQQAITTTASDSHSAPISIQVQKVLQTLEDSDEQQLTHCKMEPNMS
SSPKLETIEIVHFETAEDTKPIIHKTRKNDPGSSKERPYACEQCGKTFLLKHHLTTHARS
HTGERPHVCPHCGKDFSHKHCLNTHLLLHTTERPYQCGECKKCFTLKHHLLTHLRVHTRD
RPFVCQECGRSFPLKRHLVTHSKFHAGERPYICDDCGESFSQKEHLDMHSRFHGSVNPFA
CNDCGATFARKFQLINHGKLHGRVPHSCTVCGREFLQKRTLATHMKTHT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 34 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 151 | 183 | 7.8E-13 |
| 31 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 184 | 211 | 1.4E-11 |
| 30 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 212 | 237 | 1.9E-11 |
| 33 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 238 | 264 | 1.4E-10 |
| 29 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 265 | 291 | 9.6E-11 |
| 28 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 292 | 323 | 3.0E-5 |
| 32 | g8279.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 325 | 349 | 7.8E-8 |
| 7 | g8279.t4 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 63 | 252 | 3.4E-94 |
| 10 | g8279.t4 | PANTHER | PTHR23226:SF230 | FI01424P-RELATED | 63 | 252 | 3.4E-94 |
| 6 | g8279.t4 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 214 | 321 | 3.4E-94 |
| 9 | g8279.t4 | PANTHER | PTHR23226:SF230 | FI01424P-RELATED | 214 | 321 | 3.4E-94 |
| 5 | g8279.t4 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 239 | 349 | 3.4E-94 |
| 8 | g8279.t4 | PANTHER | PTHR23226:SF230 | FI01424P-RELATED | 239 | 349 | 3.4E-94 |
| 4 | g8279.t4 | Pfam | PF00096 | Zinc finger, C2H2 type | 215 | 237 | 0.005 |
| 3 | g8279.t4 | Pfam | PF00096 | Zinc finger, C2H2 type | 243 | 265 | 0.0074 |
| 2 | g8279.t4 | Pfam | PF00096 | Zinc finger, C2H2 type | 271 | 293 | 9.8E-4 |
| 1 | g8279.t4 | Pfam | PF00096 | Zinc finger, C2H2 type | 299 | 321 | 0.0011 |
| 24 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 161 | 181 | - |
| 23 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 189 | 209 | - |
| 27 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 217 | 237 | - |
| 22 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 245 | 265 | - |
| 26 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 273 | 293 | - |
| 25 | g8279.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 328 | 348 | - |
| 39 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 159 | 186 | 16.893 |
| 40 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 187 | 214 | 13.817 |
| 36 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 215 | 242 | 15.064 |
| 41 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 243 | 270 | 15.667 |
| 38 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 271 | 298 | 13.588 |
| 35 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 299 | 321 | 10.907 |
| 37 | g8279.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 326 | 349 | 12.695 |
| 20 | g8279.t4 | SMART | SM00355 | c2h2final6 | 159 | 181 | 0.044 |
| 19 | g8279.t4 | SMART | SM00355 | c2h2final6 | 187 | 209 | 0.35 |
| 21 | g8279.t4 | SMART | SM00355 | c2h2final6 | 215 | 237 | 0.12 |
| 17 | g8279.t4 | SMART | SM00355 | c2h2final6 | 243 | 265 | 0.035 |
| 16 | g8279.t4 | SMART | SM00355 | c2h2final6 | 271 | 293 | 0.014 |
| 15 | g8279.t4 | SMART | SM00355 | c2h2final6 | 299 | 321 | 0.89 |
| 18 | g8279.t4 | SMART | SM00355 | c2h2final6 | 326 | 348 | 0.0025 |
| 14 | g8279.t4 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 155 | 205 | 9.63E-16 |
| 13 | g8279.t4 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 196 | 252 | 8.35E-17 |
| 11 | g8279.t4 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 251 | 308 | 1.43E-16 |
| 12 | g8279.t4 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 298 | 348 | 2.9E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed