General information for g8281.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8281 is located on chr_2: 29541423..29541922 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8281 | g8281.t1 | TSS | g8281.t1 | 29540549 | 29540549 |
| chr_2 | g8281 | g8281.t1 | isoform | g8281.t1 | 29540642 | 29541881 |
| chr_2 | g8281 | g8281.t1 | exon | g8281.t1.exon1 | 29540642 | 29540721 |
| chr_2 | g8281 | g8281.t1 | cds | g8281.t1.CDS1 | 29540642 | 29540721 |
| chr_2 | g8281 | g8281.t1 | exon | g8281.t1.exon2 | 29540809 | 29540891 |
| chr_2 | g8281 | g8281.t1 | cds | g8281.t1.CDS2 | 29540809 | 29540891 |
| chr_2 | g8281 | g8281.t1 | exon | g8281.t1.exon3 | 29540950 | 29541881 |
| chr_2 | g8281 | g8281.t1 | cds | g8281.t1.CDS3 | 29540950 | 29541881 |
| chr_2 | g8281 | g8281.t1 | TTS | g8281.t1 | 29541997 | 29541997 |
Sequences
>g8281.t1 Gene=g8281 Length=1095
ATGGAAACTGTTACAGAAAACTTTAGTTCAAATAATATGGTAAATCAAGGTGCAATTATC
CCTTCATCTTCAGTTTGCAAATACAGAGAATATGTTAACTCAATGCGATGGAATAAACAC
AATAAAGAGCTTTTAAATCAAGCTGAAACCACTATGTTATCAGTCGTAAAAGTGCCCTTT
GATGTCAAATATGTTTCAATTGGAGATTGCGTGGGTACGGATGATAAAATTTGGACATTG
TCAGCTAATGTAGATAGTATGAACACTCCAATTGTGCTTATTCACGGTTTTGCAGCTGCT
CTTGCGTTATGGCTAAAAAACTTAGATGCTCTTGCTAAAGAACATCCAGTATATGGGTTT
GATTTACCCGGATTTGGTAAAAGCTCACGACCGGAGTTCGCATCGGAAGCAGACGAAATT
GAGTTACAATTTTGTGAATCGATTGAAAGATGGAGAAAAGCGATGAATATCTCAAAAATG
ATTCTTATTGGTCATTCATTTGGTGGTTTTTTGTCAACATCGTATGCAATGAGATATGAT
CAGCATGTAGAACATTTGATTTTAGCCGATCCATGGGGATTTGTAGAAAAACCTGATTTA
TCAAATAGGCCTTATTGGCAACGAGTTCTTATAAAAGTTTTCGGAAAAATGGCACCATTA
TCAATTGTTCGGGCAGCTGGTCCTTACGGTGAATGGTTAATTCAAAGAGCAAGAAAAGAT
ATTATGGAAAAATATGTAAATGTTGTTGAAGATCCTCGAGTGATTGCAACTTATATTCAT
CAATGTAATACAGATCATCCGAGTGGTGAACATGCTTTTAAAAGACTTCTTTTTGGTGGT
CCTTGGGCACGGCATCCTATGGGTGAACGAATGCGAGAAAACTTCCCTAAAGATCTTCCA
GTAACGTTTCTTTATGGAGCAAAATCATGGATGGATAATAGATATGGTGAAATTATCAAG
GAATCAAGACCAAATAGTTATACGCACATTGAACATGTTTCTGATGCTGGTCATCACGTT
TATGCTGATAACGCAGAAGAATTTAATAAGTTCACCTTAGATGCTTGCAAAATACTCAAG
TCAAATTTAAAATAA
>g8281.t1 Gene=g8281 Length=364
METVTENFSSNNMVNQGAIIPSSSVCKYREYVNSMRWNKHNKELLNQAETTMLSVVKVPF
DVKYVSIGDCVGTDDKIWTLSANVDSMNTPIVLIHGFAAALALWLKNLDALAKEHPVYGF
DLPGFGKSSRPEFASEADEIELQFCESIERWRKAMNISKMILIGHSFGGFLSTSYAMRYD
QHVEHLILADPWGFVEKPDLSNRPYWQRVLIKVFGKMAPLSIVRAAGPYGEWLIQRARKD
IMEKYVNVVEDPRVIATYIHQCNTDHPSGEHAFKRLLFGGPWARHPMGERMRENFPKDLP
VTFLYGAKSWMDNRYGEIIKESRPNSYTHIEHVSDAGHHVYADNAEEFNKFTLDACKILK
SNLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8281.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 31 | 357 | 0e+00 |
| 2 | g8281.t1 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 37 | 357 | 0e+00 |
| 3 | g8281.t1 | PANTHER | PTHR42886 | RE40534P-RELATED | 37 | 357 | 0e+00 |
| 6 | g8281.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 114 | 129 | 4e-07 |
| 4 | g8281.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 162 | 175 | 4e-07 |
| 5 | g8281.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 176 | 189 | 4e-07 |
| 1 | g8281.t1 | Pfam | PF00561 | alpha/beta hydrolase fold | 90 | 213 | 0e+00 |
| 7 | g8281.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 77 | 353 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13699 (abhydrolase domain-containing protein 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
