General information for g8282.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t10 | TSS | g8282.t10 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t10 | isoform | g8282.t10 | 29542451 | 29544468 |
| chr_2 | g8282 | g8282.t10 | exon | g8282.t10.exon1 | 29542451 | 29542494 |
| chr_2 | g8282 | g8282.t10 | cds | g8282.t10.CDS1 | 29542451 | 29542494 |
| chr_2 | g8282 | g8282.t10 | exon | g8282.t10.exon2 | 29542643 | 29543014 |
| chr_2 | g8282 | g8282.t10 | cds | g8282.t10.CDS2 | 29542643 | 29543014 |
| chr_2 | g8282 | g8282.t10 | exon | g8282.t10.exon3 | 29543101 | 29543279 |
| chr_2 | g8282 | g8282.t10 | cds | g8282.t10.CDS3 | 29543101 | 29543279 |
| chr_2 | g8282 | g8282.t10 | exon | g8282.t10.exon4 | 29543332 | 29544468 |
| chr_2 | g8282 | g8282.t10 | cds | g8282.t10.CDS4 | 29543332 | 29543870 |
| chr_2 | g8282 | g8282.t10 | TTS | g8282.t10 | 29544722 | 29544722 |
Sequences
>g8282.t10 Gene=g8282 Length=1732
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGGCGCTTCCTTTCATCT
TTATTAAAATGGAATTTTCATTCTGTGAAGAGCTTAGACAAGGCAGAAGAAAGGATGTTA
TCGAGTAAGAGACCTAAGAAAAAAATCGTTATTCTCAATTTTTTTATATCATCTTCGTCA
ATTACAGGCATAAAGACAAGTTATAATAAATTTTATGTAGACATTGGCTCTTGTATTGGT
GATAATGATAAAATATGGACTCTTTCGATGAACACTGACAGTGAAAAGGTCCCCATTCTT
CTCTTACATGGGTTTGCTGCTGCGATTTGCCTGTGGGTTCTAAACCTTGATGCTTTTGCA
GCAGCTGGTCATCCTATTTATGCAATTGATTTGCCCGGATTTGGTAAAAGCTCAAGACCT
AAATTTTCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGG
CGTCAATGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTT
TCTACTGCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGATCCC
TGGGGTTTCATTAGCTTAAAATCGGATGAATTTAAAAAGTGTTCACTCTATAAAAAATCA
ATAATGTTCCTTACAAGTAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTC
GGCCCTGTGATACTTAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTT
GAGAAGCATGACAAAACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACT
GGAGAGTATGCCTTTCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTT
GAAAGATTAAAAGATCAGTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAG
AGCTGGCTCGAAAACTCTTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACT
CACATAGAGTACATCGAATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTT
AATCGATTAGTTGTTGAGGCTTGCAAAATTGTGAAATCTGCTAATTTTAATTAATTAAAG
CTTTGTTGGTAAATGTGTTGTTTCTAAGTGCTTTAAAAGAAAAAAACTTTTTCGTTTGTT
AATAGGTTTTTGATAACATTTATATGTGATTTCACTAAAACTAGGTATCTATTGTTTTTG
CTATATTTTGCATTAAAAAATATAATATGATATTTAAAAAATAATTTTTATCTTGCAAGA
AATTAGCGCACAGATGAAATCACATATAAATGTGCACTTTGCTGCCATATCTAGCGATTA
GAATTGAAAATTTCCTATAAAGCACAAAAAAACATGATTATCTTGTGTGAAAAAATTTTG
AAGAAAAATTTACCTCCCAATTTTTGAAGTCACTTTATTGCCTCAATCGAATGAAGAAAA
ACTATTTTATTAAAATAACACAAAAATATTATATATATATATATTTTATAAGACTCAAAG
AAATATGTATGTCGATTATGAAACATTAAAATGTTTTTTTTTTATTATTGGTTACTCTCA
CTCTCTCTTTTCTCTTAATTTCCAATATCAATGAAATTCACACTCATTCACACATATTGT
ATGTGTGAATTTTTGAATGCATATTATTTTATTAAATGAAAATAAATTGATG
>g8282.t10 Gene=g8282 Length=377
MVSDSDIYRTNQSDRRFLSSLLKWNFHSVKSLDKAEERMLSSKRPKKKIVILNFFISSSS
ITGIKTSYNKFYVDIGSCIGDNDKIWTLSMNTDSEKVPILLLHGFAAAICLWVLNLDAFA
AAGHPIYAIDLPGFGKSSRPKFSKDPKEIEMQYVNSIEKWRQCMKIEKFIILGHSFGGYL
STAYTIQFPLRIEHLILADPWGFISLKSDEFKKCSLYKKSIMFLTSKISPLAIVRMAGPL
GPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITGEYAFRDLLHIGVYPKRPMF
ERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTHIEYIESAGHQLFSDDATEF
NRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8282.t10 | Gene3D | G3DSA:3.40.50.1820 | - | 81 | 369 | 1.2E-35 |
| 2 | g8282.t10 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 64 | 369 | 5.2E-89 |
| 3 | g8282.t10 | PANTHER | PTHR42886 | RE40534P-RELATED | 64 | 369 | 5.2E-89 |
| 5 | g8282.t10 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 123 | 138 | 9.1E-9 |
| 4 | g8282.t10 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 171 | 184 | 9.1E-9 |
| 6 | g8282.t10 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 185 | 198 | 9.1E-9 |
| 1 | g8282.t10 | Pfam | PF00561 | alpha/beta hydrolase fold | 98 | 200 | 2.4E-18 |
| 10 | g8282.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 48 | - |
| 14 | g8282.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 68 | - |
| 12 | g8282.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 69 | 96 | - |
| 13 | g8282.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 114 | - |
| 11 | g8282.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 115 | 377 | - |
| 8 | g8282.t10 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 81 | 365 | 8.11E-40 |
| 7 | g8282.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 121 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
