Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8282 g8282.t11 TSS g8282.t11 29542317 29542317
chr_2 g8282 g8282.t11 isoform g8282.t11 29542451 29544468
chr_2 g8282 g8282.t11 exon g8282.t11.exon1 29542451 29543350
chr_2 g8282 g8282.t11 exon g8282.t11.exon2 29543414 29543866
chr_2 g8282 g8282.t11 cds g8282.t11.CDS1 29543442 29543866
chr_2 g8282 g8282.t11 exon g8282.t11.exon3 29544206 29544468
chr_2 g8282 g8282.t11 cds g8282.t11.CDS2 29544206 29544230
chr_2 g8282 g8282.t11 TTS g8282.t11 29544722 29544722

Sequences

>g8282.t11 Gene=g8282 Length=1616
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGGTGTGTAGGATTTATA
TTTTTCAAAAATATGTCATAATTTTGTGAAATAAACCTCTTTTTTTTTCTATATTTTATG
ACCTTGAACTTAAATTAAATCAAAAAATATTTTAATAAAATTTCTGTCTGAATTGACTGA
TTGAATCATTAGGCGCTTCCTTTCATCTTTATTAAAATGGAATTTTCATTCTGTGAAGAG
CTTAGACAAGGCAGAAGAAAGGATGTTATCGAGTAAGAGACCTAAGAAAAAAATCGTTAT
TCTCAATTTTTTTATATCATCTTCGTCAATTACAGGCATAAAGACAAGTTATAATAAATT
TTATGTAGACATTGGCTCTTGTATTGGTGATAATGATAAAATATGGACTCTTTCGATGAA
CACTGACAGTGAAAAGGTCCCCATTCTTCTCTTACATGGGTTTGCTGCTGCGATTTGCCT
GTGGGTTCTAAACCTTGATGCTTTTGCAGCAGCTGGTCATCCTATTTATGCAATTGATTT
GCCCGGATTTGGTAAAAGCTCAAGGTATACATACTTAAATTTTATACAATAACTGTTATT
GAATAACATAGTTCATTTTCCATTTAATTTCTTTTTTCTTCCCTAAAAAGACCTAAATTT
TCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGTCAA
TGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCTACT
GCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGGTAATTGAAAA
TAATTTATGGTCGATAAATTATTTTAAATTTTTTTTTTCAGATCCCTGGGGTTTCATTAG
TAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGATACTTAG
AAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGACAAAAC
AATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGCCTTTCG
AGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGATTAAAAGATCA
GTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGGCTCGAAAACTC
TTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATAGAGTACATCGA
ATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGTTGTTGA
GGCTTGCAAAATTGTGAAATCTGCTAATTTTAATCACTTTATTGCCTCAATCGAATGAAG
AAAAACTATTTTATTAAAATAACACAAAAATATTATATATATATATATTTTATAAGACTC
AAAGAAATATGTATGTCGATTATGAAACATTAAAATGTTTTTTTTTTATTATTGGTTACT
CTCACTCTCTCTTTTCTCTTAATTTCCAATATCAATGAAATTCACACTCATTCACACATA
TTGTATGTGTGAATTTTTGAATGCATATTATTTTATTAAATGAAAATAAATTGATG

>g8282.t11 Gene=g8282 Length=149
MAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITGEYAFRDLLHIGVYP
KRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTHIEYIESAGHQLFSD
DATEFNRLVVEACKIVKSANFNHFIASIE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g8282.t11 Gene3D G3DSA:3.40.50.1820 - 9 134 2.1e-05
1 g8282.t11 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 1 134 0.0e+00
2 g8282.t11 PANTHER PTHR42886 RE40534P-RELATED 1 134 0.0e+00
3 g8282.t11 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 6 130 1.9e-06

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed