General information for g8282.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t12 | TSS | g8282.t12 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t12 | isoform | g8282.t12 | 29543111 | 29543870 |
| chr_2 | g8282 | g8282.t12 | exon | g8282.t12.exon1 | 29543111 | 29543279 |
| chr_2 | g8282 | g8282.t12 | cds | g8282.t12.CDS1 | 29543135 | 29543279 |
| chr_2 | g8282 | g8282.t12 | exon | g8282.t12.exon2 | 29543332 | 29543870 |
| chr_2 | g8282 | g8282.t12 | cds | g8282.t12.CDS2 | 29543332 | 29543870 |
| chr_2 | g8282 | g8282.t12 | TTS | g8282.t12 | 29544722 | 29544722 |
Sequences
>g8282.t12 Gene=g8282 Length=708
TCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGTCAA
TGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCTACT
GCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGATCCCTGGGGT
TTCATTAGCTTAAAATCGGATGAATTTAAAAAGTGTTCACTCTATAAAAAATCAATAATG
TTCCTTACAAGTAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCT
GTGATACTTAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAG
CATGACAAAACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAG
TATGCCTTTCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGA
TTAAAAGATCAGTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGG
CTCGAAAACTCTTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATA
GAGTACATCGAATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGA
TTAGTTGTTGAGGCTTGCAAAATTGTGAAATCTGCTAATTTTAATTAA
>g8282.t12 Gene=g8282 Length=227
MQYVNSIEKWRQCMKIEKFIILGHSFGGYLSTAYTIQFPLRIEHLILADPWGFISLKSDE
FKKCSLYKKSIMFLTSKISPLAIVRMAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKY
VYHCNTKKITGEYAFRDLLHIGVYPKRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYA
IKELRPNSYTHIEYIESAGHQLFSDDATEFNRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8282.t12 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 219 | 4.2E-19 |
| 2 | g8282.t12 | PANTHER | PTHR42886:SF21 | PROTEIN ABHD4 | 2 | 219 | 1.3E-59 |
| 3 | g8282.t12 | PANTHER | PTHR42886 | RE40534P-RELATED | 2 | 219 | 1.3E-59 |
| 1 | g8282.t12 | Pfam | PF00561 | alpha/beta hydrolase fold | 5 | 50 | 2.2E-8 |
| 5 | g8282.t12 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 2 | 215 | 2.17E-24 |
| 4 | g8282.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 19 | 38 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
