General information for g8282.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t13 | TSS | g8282.t13 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t13 | isoform | g8282.t13 | 29543111 | 29544468 |
| chr_2 | g8282 | g8282.t13 | exon | g8282.t13.exon1 | 29543111 | 29543350 |
| chr_2 | g8282 | g8282.t13 | exon | g8282.t13.exon2 | 29543411 | 29543855 |
| chr_2 | g8282 | g8282.t13 | cds | g8282.t13.CDS1 | 29543442 | 29543855 |
| chr_2 | g8282 | g8282.t13 | exon | g8282.t13.exon3 | 29544194 | 29544468 |
| chr_2 | g8282 | g8282.t13 | cds | g8282.t13.CDS2 | 29544194 | 29544325 |
| chr_2 | g8282 | g8282.t13 | TTS | g8282.t13 | 29544722 | 29544722 |
Sequences
>g8282.t13 Gene=g8282 Length=960
TCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGTCAA
TGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCTACT
GCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGGTAATTGAAAA
TAATTTATGGTCGATAAATTATTTTAAATTTTTTTTTTCAGATCCCTGGGGTTTCATTAG
AAGTAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGATACT
TAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGACAA
AACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGCCTT
TCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGATTAAAAGA
TCAGTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGGCTCGAAAA
CTCTTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATAGAGTACAT
CGAATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGTTGT
TGAGGCTTGCAAAATTGTGAAATCTCAATTTTTGAAGTCACTTTATTGCCTCAATCGAAT
GAAGAAAAACTATTTTATTAAAATAACACAAAAATATTATATATATATATATTTTATAAG
ACTCAAAGAAATATGTATGTCGATTATGAAACATTAAAATGTTTTTTTTTTATTATTGGT
TACTCTCACTCTCTCTTTTCTCTTAATTTCCAATATCAATGAAATTCACACTCATTCACA
CATATTGTATGTGTGAATTTTTGAATGCATATTATTTTATTAAATGAAAATAAATTGATG
>g8282.t13 Gene=g8282 Length=181
MAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITGEYAFRDLLHIGVYP
KRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTHIEYIESAGHQLFSD
DATEFNRLVVEACKIVKSQFLKSLYCLNRMKKNYFIKITQKYYIYIYFIRLKEICMSIMK
H
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8282.t13 | Gene3D | G3DSA:3.40.50.1820 | - | 9 | 134 | 3.8e-05 |
| 1 | g8282.t13 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 1 | 134 | 0.0e+00 |
| 2 | g8282.t13 | PANTHER | PTHR42886 | RE40534P-RELATED | 1 | 134 | 0.0e+00 |
| 3 | g8282.t13 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 7 | 130 | 3.6e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
