General information for g8282.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t15 | TSS | g8282.t15 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t15 | isoform | g8282.t15 | 29543334 | 29544468 |
| chr_2 | g8282 | g8282.t15 | exon | g8282.t15.exon1 | 29543334 | 29544468 |
| chr_2 | g8282 | g8282.t15 | cds | g8282.t15.CDS1 | 29543400 | 29543870 |
| chr_2 | g8282 | g8282.t15 | TTS | g8282.t15 | 29544722 | 29544722 |
Sequences
>g8282.t15 Gene=g8282 Length=1135
CCCTGGGGTTTCATTAGCTTAAAATCGGATGAATTTAAAAAGTGTTCACTCTATAAAAAA
TCAATAATGTTCCTTACAAGTAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCA
CTCGGCCCTGTGATACTTAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTG
GTTGAGAAGCATGACAAAACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATA
ACTGGAGAGTATGCCTTTCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATG
TTTGAAAGATTAAAAGATCAGTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGA
CAGAGCTGGCTCGAAAACTCTTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTAC
ACTCACATAGAGTACATCGAATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAA
TTTAATCGATTAGTTGTTGAGGCTTGCAAAATTGTGAAATCTGCTAATTTTAATTAATTA
AAGCTTTGTTGGTAAATGTGTTGTTTCTAAGTGCTTTAAAAGAAAAAAACTTTTTCGTTT
GTTAATAGGTTTTTGATAACATTTATATGTGATTTCACTAAAACTAGGTATCTATTGTTT
TTGCTATATTTTGCATTAAAAAATATAATATGATATTTAAAAAATAATTTTTATCTTGCA
AGAAATTAGCGCACAGATGAAATCACATATAAATGTGCACTTTGCTGCCATATCTAGCGA
TTAGAATTGAAAATTTCCTATAAAGCACAAAAAAACATGATTATCTTGTGTGAAAAAATT
TTGAAGAAAAATTTACCTCCCAATTTTTGAAGTCACTTTATTGCCTCAATCGAATGAAGA
AAAACTATTTTATTAAAATAACACAAAAATATTATATATATATATATTTTATAAGACTCA
AAGAAATATGTATGTCGATTATGAAACATTAAAATGTTTTTTTTTTATTATTGGTTACTC
TCACTCTCTCTTTTCTCTTAATTTCCAATATCAATGAAATTCACACTCATTCACACATAT
TGTATGTGTGAATTTTTGAATGCATATTATTTTATTAAATGAAAATAAATTGATG
>g8282.t15 Gene=g8282 Length=156
MFLTSKISPLAIVRMAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITG
EYAFRDLLHIGVYPKRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTH
IEYIESAGHQLFSDDATEFNRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8282.t15 | Gene3D | G3DSA:3.40.50.1820 | - | 18 | 148 | 2.2e-05 |
| 1 | g8282.t15 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 6 | 148 | 0.0e+00 |
| 2 | g8282.t15 | PANTHER | PTHR42886 | RE40534P-RELATED | 6 | 148 | 0.0e+00 |
| 3 | g8282.t15 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 8 | 144 | 3.0e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
