General information for g8282.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t16 | isoform | g8282.t16 | 29543414 | 29544206 |
| chr_2 | g8282 | g8282.t16 | exon | g8282.t16.exon1 | 29543414 | 29544132 |
| chr_2 | g8282 | g8282.t16 | cds | g8282.t16.CDS1 | 29543442 | 29543870 |
| chr_2 | g8282 | g8282.t16 | exon | g8282.t16.exon2 | 29544193 | 29544206 |
| chr_2 | g8282 | g8282.t16 | TTS | g8282.t16 | 29544722 | 29544722 |
| chr_2 | g8282 | g8282.t16 | TSS | g8282.t16 | NA | NA |
Sequences
>g8282.t16 Gene=g8282 Length=733
TAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGATACTTAG
AAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGACAAAAC
AATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGCCTTTCG
AGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGATTAAAAGATCA
GTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGGCTCGAAAACTC
TTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATAGAGTACATCGA
ATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGTTGTTGA
GGCTTGCAAAATTGTGAAATCTGCTAATTTTAATTAATTAAAGCTTTGTTGGTAAATGTG
TTGTTTCTAAGTGCTTTAAAAGAAAAAAACTTTTTCGTTTGTTAATAGGTTTTTGATAAC
ATTTATATGTGATTTCACTAAAACTAGGTATCTATTGTTTTTGCTATATTTTGCATTAAA
AAATATAATATGATATTTAAAAAATAATTTTTATCTTGCAAGAAATTAGCGCACAGATGA
AATCACATATAAATGTGCACTTTGCTGCCATATCTAGCGATTAGAATTGAAAATTTCCTC
CAATTTTTGAAGT
>g8282.t16 Gene=g8282 Length=142
MAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITGEYAFRDLLHIGVYP
KRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTHIEYIESAGHQLFSD
DATEFNRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8282.t16 | Gene3D | G3DSA:3.40.50.1820 | - | 9 | 134 | 1.8e-05 |
| 1 | g8282.t16 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 1 | 134 | 0.0e+00 |
| 2 | g8282.t16 | PANTHER | PTHR42886 | RE40534P-RELATED | 1 | 134 | 0.0e+00 |
| 3 | g8282.t16 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 6 | 130 | 1.5e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
