Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Abhydrolase domain-containing protein abhd-5.2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8282 g8282.t2 TSS g8282.t2 29542317 29542317
chr_2 g8282 g8282.t2 isoform g8282.t2 29542451 29543414
chr_2 g8282 g8282.t2 exon g8282.t2.exon1 29542451 29543014
chr_2 g8282 g8282.t2 cds g8282.t2.CDS1 29542713 29543014
chr_2 g8282 g8282.t2 exon g8282.t2.exon2 29543101 29543279
chr_2 g8282 g8282.t2 cds g8282.t2.CDS2 29543101 29543279
chr_2 g8282 g8282.t2 exon g8282.t2.exon3 29543332 29543414
chr_2 g8282 g8282.t2 cds g8282.t2.CDS3 29543332 29543414
chr_2 g8282 g8282.t2 TTS g8282.t2 29544337 29544337

Sequences

>g8282.t2 Gene=g8282 Length=826
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGGTGTGTAGGATTTATA
TTTTTCAAAAATATGTCATAATTTTGTGAAATAAACCTCTTTTTTTTTCTATATTTTATG
ACCTTGAACTTAAATTAAATCAAAAAATATTTTAATAAAATTTCTGTCTGAATTGACTGA
TTGAATCATTAGGCGCTTCCTTTCATCTTTATTAAAATGGAATTTTCATTCTGTGAAGAG
CTTAGACAAGGCAGAAGAAAGGATGTTATCGAGTAAGAGACCTAAGAAAAAAATCGTTAT
TCTCAATTTTTTTATATCATCTTCGTCAATTACAGGCATAAAGACAAGTTATAATAAATT
TTATGTAGACATTGGCTCTTGTATTGGTGATAATGATAAAATATGGACTCTTTCGATGAA
CACTGACAGTGAAAAGGTCCCCATTCTTCTCTTACATGGGTTTGCTGCTGCGATTTGCCT
GTGGGTTCTAAACCTTGATGCTTTTGCAGCAGCTGGTCATCCTATTTATGCAATTGATTT
GCCCGGATTTGGTAAAAGCTCAAGACCTAAATTTTCAAAGGATCCAAAAGAAATTGAAAT
GCAATATGTAAATTCCATTGAAAAGTGGCGTCAATGTATGAAAATTGAAAAATTTATAAT
TCTTGGTCATAGCTTTGGAGGATATCTTTCTACTGCTTATACTATACAATTTCCTTTGAG
AATTGAGCATTTGATTTTAGCAGATCCCTGGGGTTTCATTAGCTTAAAATCGGATGAATT
TAAAAAGTGTTCACTCTATAAAAAATCAATAATGTTCCTTACAAGT

>g8282.t2 Gene=g8282 Length=188
MLSSKRPKKKIVILNFFISSSSITGIKTSYNKFYVDIGSCIGDNDKIWTLSMNTDSEKVP
ILLLHGFAAAICLWVLNLDAFAAAGHPIYAIDLPGFGKSSRPKFSKDPKEIEMQYVNSIE
KWRQCMKIEKFIILGHSFGGYLSTAYTIQFPLRIEHLILADPWGFISLKSDEFKKCSLYK
KSIMFLTS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8282.t2 Gene3D G3DSA:3.40.50.1820 - 18 177 3.4E-28
2 g8282.t2 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 26 168 2.8E-46
3 g8282.t2 PANTHER PTHR42886 RE40534P-RELATED 26 168 2.8E-46
4 g8282.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 100 1.7E-9
5 g8282.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 133 146 1.7E-9
6 g8282.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 147 160 1.7E-9
1 g8282.t2 Pfam PF00561 alpha/beta hydrolase fold 60 162 4.9E-19
10 g8282.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
13 g8282.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
12 g8282.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 31 58 -
14 g8282.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 59 76 -
11 g8282.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 77 188 -
8 g8282.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 43 172 1.97E-30
7 g8282.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 61 83 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed