General information for g8282.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t6 | TSS | g8282.t6 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t6 | isoform | g8282.t6 | 29542451 | 29544206 |
| chr_2 | g8282 | g8282.t6 | exon | g8282.t6.exon1 | 29542451 | 29543355 |
| chr_2 | g8282 | g8282.t6 | cds | g8282.t6.CDS1 | 29542713 | 29543042 |
| chr_2 | g8282 | g8282.t6 | exon | g8282.t6.exon2 | 29543414 | 29543632 |
| chr_2 | g8282 | g8282.t6 | exon | g8282.t6.exon3 | 29543764 | 29544122 |
| chr_2 | g8282 | g8282.t6 | exon | g8282.t6.exon4 | 29544180 | 29544206 |
| chr_2 | g8282 | g8282.t6 | TTS | g8282.t6 | 29544722 | 29544722 |
Sequences
>g8282.t6 Gene=g8282 Length=1510
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGGTGTGTAGGATTTATA
TTTTTCAAAAATATGTCATAATTTTGTGAAATAAACCTCTTTTTTTTTCTATATTTTATG
ACCTTGAACTTAAATTAAATCAAAAAATATTTTAATAAAATTTCTGTCTGAATTGACTGA
TTGAATCATTAGGCGCTTCCTTTCATCTTTATTAAAATGGAATTTTCATTCTGTGAAGAG
CTTAGACAAGGCAGAAGAAAGGATGTTATCGAGTAAGAGACCTAAGAAAAAAATCGTTAT
TCTCAATTTTTTTATATCATCTTCGTCAATTACAGGCATAAAGACAAGTTATAATAAATT
TTATGTAGACATTGGCTCTTGTATTGGTGATAATGATAAAATATGGACTCTTTCGATGAA
CACTGACAGTGAAAAGGTCCCCATTCTTCTCTTACATGGGTTTGCTGCTGCGATTTGCCT
GTGGGTTCTAAACCTTGATGCTTTTGCAGCAGCTGGTCATCCTATTTATGCAATTGATTT
GCCCGGATTTGGTAAAAGCTCAAGGTATACATACTTAAATTTTATACAATAACTGTTATT
GAATAACATAGTTCATTTTCCATTTAATTTCTTTTTTCTTCCCTAAAAAGACCTAAATTT
TCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGTCAA
TGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCTACT
GCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGGTAATTGAAAA
TAATTTATGGTCGATAAATTATTTTAAATTTTTTTTTTCAGATCCCTGGGGTTTCATTAG
CTTAATAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGATA
CTTAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGAC
AAAACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGCC
TTTCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATAGTACATCGAATCTGC
TGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGTTGTTGAGGCTTG
CAAAATTGTGAAATCTGCTAATTTTAATTAATTAAAGCTTTGTTGGTAAATGTGTTGTTT
CTAAGTGCTTTAAAAGAAAAAAACTTTTTCGTTTGTTAATAGGTTTTTGATAACATTTAT
ATGTGATTTCACTAAAACTAGGTATCTATTGTTTTTGCTATATTTTGCATTAAAAAATAT
AATATGATATTTAAAAAATAATTTTTATCTTGCAAGAAATTAGCGCACAGATGAAATCAC
ATATAAATGTGCACTTTGCTGCCATATCTAGCGATTAGAATTGAAAAATTTACCTCCCAA
TTTTTGAAGT
>g8282.t6 Gene=g8282 Length=109
MLSSKRPKKKIVILNFFISSSSITGIKTSYNKFYVDIGSCIGDNDKIWTLSMNTDSEKVP
ILLLHGFAAAICLWVLNLDAFAAAGHPIYAIDLPGFGKSSRYTYLNFIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8282.t6 | Gene3D | G3DSA:3.40.50.1820 | - | 26 | 108 | 3.0E-11 |
| 1 | g8282.t6 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 26 | 103 | 2.5E-15 |
| 2 | g8282.t6 | PANTHER | PTHR42886 | RE40534P-RELATED | 26 | 103 | 2.5E-15 |
| 6 | g8282.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 9 | g8282.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| 8 | g8282.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 58 | - |
| 10 | g8282.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 76 | - |
| 7 | g8282.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 77 | 109 | - |
| 4 | g8282.t6 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 45 | 99 | 1.39E-12 |
| 3 | g8282.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 61 | 83 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed