General information for g8282.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t8 | TSS | g8282.t8 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t8 | isoform | g8282.t8 | 29542451 | 29544468 |
| chr_2 | g8282 | g8282.t8 | exon | g8282.t8.exon1 | 29542451 | 29542494 |
| chr_2 | g8282 | g8282.t8 | exon | g8282.t8.exon2 | 29542643 | 29542722 |
| chr_2 | g8282 | g8282.t8 | exon | g8282.t8.exon3 | 29542786 | 29543014 |
| chr_2 | g8282 | g8282.t8 | exon | g8282.t8.exon4 | 29543101 | 29544468 |
| chr_2 | g8282 | g8282.t8 | cds | g8282.t8.CDS1 | 29543400 | 29543870 |
| chr_2 | g8282 | g8282.t8 | TTS | g8282.t8 | 29544722 | 29544722 |
Sequences
>g8282.t8 Gene=g8282 Length=1721
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGGCGCTTCCTTTCATCT
TTATTAAAATGGAATTTTCATTCTGTGAAGAGCTTAGACAAGGCAGAAGAAAGGATGTTA
TCGAGCATAAAGACAAGTTATAATAAATTTTATGTAGACATTGGCTCTTGTATTGGTGAT
AATGATAAAATATGGACTCTTTCGATGAACACTGACAGTGAAAAGGTCCCCATTCTTCTC
TTACATGGGTTTGCTGCTGCGATTTGCCTGTGGGTTCTAAACCTTGATGCTTTTGCAGCA
GCTGGTCATCCTATTTATGCAATTGATTTGCCCGGATTTGGTAAAAGCTCAAGACCTAAA
TTTTCAAAGGATCCAAAAGAAATTGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGT
CAATGTATGAAAATTGAAAAATTTATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCT
ACTGCTTATACTATACAATTTCCTTTGAGAATTGAGCATTTGATTTTAGCAGGTAATTGA
AAATAATTTATGGTCGATAAATTATTTTAAATTTTTTTTTTCAGATCCCTGGGGTTTCAT
TAGCTTAAAATCGGATGAATTTAAAAAGTGTTCACTCTATAAAAAATCAATAATGTTCCT
TACAAGTAAAATTTCACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGAT
ACTTAGAAAAGGCCGTCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGA
CAAAACAATTGCGAAATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGC
CTTTCGAGATTTACTTCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGATTAAA
AGATCAGTTGAGTGAGGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGGCTCGA
AAACTCTTATGGTTATGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATAGAGTA
CATCGAATCTGCTGGTCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGT
TGTTGAGGCTTGCAAAATTGTGAAATCTGCTAATTTTAATTAATTAAAGCTTTGTTGGTA
AATGTGTTGTTTCTAAGTGCTTTAAAAGAAAAAAACTTTTTCGTTTGTTAATAGGTTTTT
GATAACATTTATATGTGATTTCACTAAAACTAGGTATCTATTGTTTTTGCTATATTTTGC
ATTAAAAAATATAATATGATATTTAAAAAATAATTTTTATCTTGCAAGAAATTAGCGCAC
AGATGAAATCACATATAAATGTGCACTTTGCTGCCATATCTAGCGATTAGAATTGAAAAT
TTCCTATAAAGCACAAAAAAACATGATTATCTTGTGTGAAAAAATTTTGAAGAAAAATTT
ACCTCCCAATTTTTGAAGTCACTTTATTGCCTCAATCGAATGAAGAAAAACTATTTTATT
AAAATAACACAAAAATATTATATATATATATATTTTATAAGACTCAAAGAAATATGTATG
TCGATTATGAAACATTAAAATGTTTTTTTTTTATTATTGGTTACTCTCACTCTCTCTTTT
CTCTTAATTTCCAATATCAATGAAATTCACACTCATTCACACATATTGTATGTGTGAATT
TTTGAATGCATATTATTTTATTAAATGAAAATAAATTGATG
>g8282.t8 Gene=g8282 Length=156
MFLTSKISPLAIVRMAGPLGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITG
EYAFRDLLHIGVYPKRPMFERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTH
IEYIESAGHQLFSDDATEFNRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8282.t8 | Gene3D | G3DSA:3.40.50.1820 | - | 18 | 148 | 2.2e-05 |
| 1 | g8282.t8 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 6 | 148 | 0.0e+00 |
| 2 | g8282.t8 | PANTHER | PTHR42886 | RE40534P-RELATED | 6 | 148 | 0.0e+00 |
| 3 | g8282.t8 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 8 | 144 | 3.0e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
