General information for g8282.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8282 is located on chr_2: 29543414..29544468 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8282 | g8282.t9 | TSS | g8282.t9 | 29542317 | 29542317 |
| chr_2 | g8282 | g8282.t9 | isoform | g8282.t9 | 29542451 | 29544468 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon1 | 29542451 | 29542494 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon2 | 29542666 | 29542722 |
| chr_2 | g8282 | g8282.t9 | cds | g8282.t9.CDS1 | 29542713 | 29542722 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon3 | 29542786 | 29543014 |
| chr_2 | g8282 | g8282.t9 | cds | g8282.t9.CDS2 | 29542786 | 29543014 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon4 | 29543101 | 29543279 |
| chr_2 | g8282 | g8282.t9 | cds | g8282.t9.CDS3 | 29543101 | 29543279 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon5 | 29543332 | 29543980 |
| chr_2 | g8282 | g8282.t9 | cds | g8282.t9.CDS4 | 29543332 | 29543870 |
| chr_2 | g8282 | g8282.t9 | exon | g8282.t9.exon6 | 29544056 | 29544468 |
| chr_2 | g8282 | g8282.t9 | TTS | g8282.t9 | 29544722 | 29544722 |
Sequences
>g8282.t9 Gene=g8282 Length=1571
ATGGTTTCTGATAGTGACATTTATCGCACAAATCAGAGTGATAGAATGGAATTTTCATTC
TGTGAAGAGCTTAGACAAGGCAGAAGAAAGGATGTTATCGAGCATAAAGACAAGTTATAA
TAAATTTTATGTAGACATTGGCTCTTGTATTGGTGATAATGATAAAATATGGACTCTTTC
GATGAACACTGACAGTGAAAAGGTCCCCATTCTTCTCTTACATGGGTTTGCTGCTGCGAT
TTGCCTGTGGGTTCTAAACCTTGATGCTTTTGCAGCAGCTGGTCATCCTATTTATGCAAT
TGATTTGCCCGGATTTGGTAAAAGCTCAAGACCTAAATTTTCAAAGGATCCAAAAGAAAT
TGAAATGCAATATGTAAATTCCATTGAAAAGTGGCGTCAATGTATGAAAATTGAAAAATT
TATAATTCTTGGTCATAGCTTTGGAGGATATCTTTCTACTGCTTATACTATACAATTTCC
TTTGAGAATTGAGCATTTGATTTTAGCAGATCCCTGGGGTTTCATTAGCTTAAAATCGGA
TGAATTTAAAAAGTGTTCACTCTATAAAAAATCAATAATGTTCCTTACAAGTAAAATTTC
ACCATTGGCTATTGTAAGAATGGCTGGTCCACTCGGCCCTGTGATACTTAGAAAAGGCCG
TCCAGATATTGTCGAAAAATATGAGAATGTGGTTGAGAAGCATGACAAAACAATTGCGAA
ATATGTTTATCATTGCAATACTAAAAAAATAACTGGAGAGTATGCCTTTCGAGATTTACT
TCATATTGGAGTTTATCCTAAAAGACCTATGTTTGAAAGATTAAAAGATCAGTTGAGTGA
GGATATTCCGATGACGTGCATTTTTGGTGGACAGAGCTGGCTCGAAAACTCTTATGGTTA
TGCTATTAAGGAATTGCGTCCTAATAGTTACACTCACATAGAGTACATCGAATCTGCTGG
TCATCAATTATTCTCAGATGATGCAACTGAATTTAATCGATTAGTTGTTGAGGCTTGCAA
AATTGTGAAATCTGCTAATTTTAATTAATTAAAGCTTTGTTGGTAAATGTGTTGTTTCTA
AGTGCTTTAAAAGAAAAAAACTTTTTCGTTTGTTAATAGGTTTTTGATAACATTTATATG
TGATTTCACTAAAACTAGAAATTAGCGCACAGATGAAATCACATATAAATGTGCACTTTG
CTGCCATATCTAGCGATTAGAATTGAAAATTTCCTATAAAGCACAAAAAAACATGATTAT
CTTGTGTGAAAAAATTTTGAAGAAAAATTTACCTCCCAATTTTTGAAGTCACTTTATTGC
CTCAATCGAATGAAGAAAAACTATTTTATTAAAATAACACAAAAATATTATATATATATA
TATTTTATAAGACTCAAAGAAATATGTATGTCGATTATGAAACATTAAAATGTTTTTTTT
TTATTATTGGTTACTCTCACTCTCTCTTTTCTCTTAATTTCCAATATCAATGAAATTCAC
ACTCATTCACACATATTGTATGTGTGAATTTTTGAATGCATATTATTTTATTAAATGAAA
ATAAATTGATG
>g8282.t9 Gene=g8282 Length=318
MLSSIKTSYNKFYVDIGSCIGDNDKIWTLSMNTDSEKVPILLLHGFAAAICLWVLNLDAF
AAAGHPIYAIDLPGFGKSSRPKFSKDPKEIEMQYVNSIEKWRQCMKIEKFIILGHSFGGY
LSTAYTIQFPLRIEHLILADPWGFISLKSDEFKKCSLYKKSIMFLTSKISPLAIVRMAGP
LGPVILRKGRPDIVEKYENVVEKHDKTIAKYVYHCNTKKITGEYAFRDLLHIGVYPKRPM
FERLKDQLSEDIPMTCIFGGQSWLENSYGYAIKELRPNSYTHIEYIESAGHQLFSDDATE
FNRLVVEACKIVKSANFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8282.t9 | Gene3D | G3DSA:3.40.50.1820 | - | 22 | 310 | 6.7E-36 |
| 2 | g8282.t9 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 1 | 310 | 2.6E-89 |
| 3 | g8282.t9 | PANTHER | PTHR42886 | RE40534P-RELATED | 1 | 310 | 2.6E-89 |
| 5 | g8282.t9 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 64 | 79 | 5.9E-9 |
| 4 | g8282.t9 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 112 | 125 | 5.9E-9 |
| 6 | g8282.t9 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 126 | 139 | 5.9E-9 |
| 1 | g8282.t9 | Pfam | PF00561 | alpha/beta hydrolase fold | 39 | 141 | 1.7E-18 |
| 11 | g8282.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 37 | - |
| 12 | g8282.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 38 | 55 | - |
| 10 | g8282.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 318 | - |
| 8 | g8282.t9 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 22 | 306 | 4.43E-40 |
| 7 | g8282.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 62 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
