General information for g8283.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8283 is located on chr_2: 29548259..29550786 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8283 | g8283.t1 | TSS | g8283.t1 | 29544769 | 29544769 |
| chr_2 | g8283 | g8283.t1 | isoform | g8283.t1 | 29544975 | 29548259 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon1 | 29544975 | 29545051 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS1 | 29544975 | 29545051 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon2 | 29546872 | 29546960 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS2 | 29546872 | 29546960 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon3 | 29547084 | 29547318 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS3 | 29547084 | 29547318 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon4 | 29547377 | 29547477 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS4 | 29547377 | 29547477 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon5 | 29547535 | 29547612 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS5 | 29547535 | 29547612 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon6 | 29547671 | 29548018 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS6 | 29547671 | 29548018 |
| chr_2 | g8283 | g8283.t1 | exon | g8283.t1.exon7 | 29548084 | 29548259 |
| chr_2 | g8283 | g8283.t1 | cds | g8283.t1.CDS7 | 29548084 | 29548259 |
| chr_2 | g8283 | g8283.t1 | TTS | g8283.t1 | 29548374 | 29548374 |
Sequences
>g8283.t1 Gene=g8283 Length=1104
ATGGAAATCGAAGCAGTGCCATGTCAGGGAAATTCCGAAATAAAATTTTTCCAAATGAAA
ATTTTTCGCGAAATAAGGCGATTCATAACATCAGTAAAGTCAGTTTTGAAATGGAATGTT
CACTGTAAGAAGCAATTAGAACACAACGAATCACTTATTCTTGCGACTGTCAAAACACCT
TATAAAAAATTTTTTGTTGATATTGGAAATTGTGTCGGACCCAGTGATAGAATTTGGACA
CTCTCAATGAACACAGAACTTGATCATGAACAACATACTCCAATTGTACTCTTACATGGG
TATGTTTCAAGTCTTGCTTTCTGGATGCTCAATTTTGACTCTTTTGCTACTGATCGACCA
GTATATGCTGTGGATTTACTCGGATTCGGCCGATCATCTAGGCCAAACTTTTCCAATGAC
CCAATTGAAATTGAAGAGCAATATGTGATGTTTTTAGAAAAATGGCGCGAAATAATGAAA
TTAGAGAAGATGATTTTATTAGGTCATTCTTTTGGAGGATGGATTGCATCACTATACGCA
TTGAGATATCCAGAAAGAGTTCAACATTTGATTTTAGCTGATCCTTGGGGATATCATGCA
AGCACAATCCATACACATTCAATTGTAAGACGTATGTTCCTTAGAATTTTTGCAAAAATT
CCGCCCTTTAGTTTAGTTAGAGCTGCTGGTCCTTTCGCATCTAGTTTATTACGAACAACC
CGTAAAGATATTGTGGGGAAATTTGAAAGCATCATGCATGAACGACATAAGAATGCTATT
TCAGAATATATCTATCATTGCAATAGTGTAAAAATAACAGGAGAAAGAGCATTTCACAGT
CTTTTACATAATGGACCATGGCCAAAACGACCATTAGTTGAAGTAATGAAGAGCTTACAT
GTTGATGTTCCAATCACTTTTGTATACGGAAAGAAATCATGGCTTGACTATACATCGGGA
TATGTGATAAAAGAAAGCCGTCCTAATTCTTACACCCAAATCGAGATAATTGAAAATGCT
GGTCATAAGGTATTCTCAGATGATGAAGTGGAATTCAATCGACTGGTTAAAGAAGCTTGT
AAAACTTTAAAATCATCAAATTAA
>g8283.t1 Gene=g8283 Length=367
MEIEAVPCQGNSEIKFFQMKIFREIRRFITSVKSVLKWNVHCKKQLEHNESLILATVKTP
YKKFFVDIGNCVGPSDRIWTLSMNTELDHEQHTPIVLLHGYVSSLAFWMLNFDSFATDRP
VYAVDLLGFGRSSRPNFSNDPIEIEEQYVMFLEKWREIMKLEKMILLGHSFGGWIASLYA
LRYPERVQHLILADPWGYHASTIHTHSIVRRMFLRIFAKIPPFSLVRAAGPFASSLLRTT
RKDIVGKFESIMHERHKNAISEYIYHCNSVKITGERAFHSLLHNGPWPKRPLVEVMKSLH
VDVPITFVYGKKSWLDYTSGYVIKESRPNSYTQIEIIENAGHKVFSDDEVEFNRLVKEAC
KTLKSSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8283.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 35 | 361 | 2.5E-42 |
| 2 | g8283.t1 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 37 | 362 | 3.7E-94 |
| 3 | g8283.t1 | PANTHER | PTHR42886 | RE40534P-RELATED | 37 | 362 | 3.7E-94 |
| 6 | g8283.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 118 | 133 | 6.0E-10 |
| 5 | g8283.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 166 | 179 | 6.0E-10 |
| 4 | g8283.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 180 | 193 | 6.0E-10 |
| 1 | g8283.t1 | Pfam | PF00561 | alpha/beta hydrolase fold | 94 | 347 | 9.0E-22 |
| 9 | g8283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 163 | - |
| 11 | g8283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 164 | 181 | - |
| 10 | g8283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 182 | 367 | - |
| 7 | g8283.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 87 | 360 | 2.26E-42 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
