Gene loci information

Transcript annotation

  • This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8283 g8283.t2 isoform g8283.t2 29544468 29548259
chr_2 g8283 g8283.t2 exon g8283.t2.exon1 29544468 29544504
chr_2 g8283 g8283.t2 exon g8283.t2.exon2 29547084 29547318
chr_2 g8283 g8283.t2 cds g8283.t2.CDS1 29547164 29547318
chr_2 g8283 g8283.t2 exon g8283.t2.exon3 29547377 29547477
chr_2 g8283 g8283.t2 cds g8283.t2.CDS2 29547377 29547477
chr_2 g8283 g8283.t2 exon g8283.t2.exon4 29547535 29547612
chr_2 g8283 g8283.t2 cds g8283.t2.CDS3 29547535 29547612
chr_2 g8283 g8283.t2 exon g8283.t2.exon5 29547671 29548018
chr_2 g8283 g8283.t2 cds g8283.t2.CDS4 29547671 29548018
chr_2 g8283 g8283.t2 exon g8283.t2.exon6 29548084 29548259
chr_2 g8283 g8283.t2 cds g8283.t2.CDS5 29548084 29548259
chr_2 g8283 g8283.t2 TTS g8283.t2 29548374 29548374
chr_2 g8283 g8283.t2 TSS g8283.t2 NA NA

Sequences

>g8283.t2 Gene=g8283 Length=975
GCATGCATAAACAGAGAGAGGTGAAAAATTCCTTAAACTGTCAAAACACCTTATAAAAAA
TTTTTTGTTGATATTGGAAATTGTGTCGGACCCAGTGATAGAATTTGGACACTCTCAATG
AACACAGAACTTGATCATGAACAACATACTCCAATTGTACTCTTACATGGGTATGTTTCA
AGTCTTGCTTTCTGGATGCTCAATTTTGACTCTTTTGCTACTGATCGACCAGTATATGCT
GTGGATTTACTCGGATTCGGCCGATCATCTAGGCCAAACTTTTCCAATGACCCAATTGAA
ATTGAAGAGCAATATGTGATGTTTTTAGAAAAATGGCGCGAAATAATGAAATTAGAGAAG
ATGATTTTATTAGGTCATTCTTTTGGAGGATGGATTGCATCACTATACGCATTGAGATAT
CCAGAAAGAGTTCAACATTTGATTTTAGCTGATCCTTGGGGATATCATGCAAGCACAATC
CATACACATTCAATTGTAAGACGTATGTTCCTTAGAATTTTTGCAAAAATTCCGCCCTTT
AGTTTAGTTAGAGCTGCTGGTCCTTTCGCATCTAGTTTATTACGAACAACCCGTAAAGAT
ATTGTGGGGAAATTTGAAAGCATCATGCATGAACGACATAAGAATGCTATTTCAGAATAT
ATCTATCATTGCAATAGTGTAAAAATAACAGGAGAAAGAGCATTTCACAGTCTTTTACAT
AATGGACCATGGCCAAAACGACCATTAGTTGAAGTAATGAAGAGCTTACATGTTGATGTT
CCAATCACTTTTGTATACGGAAAGAAATCATGGCTTGACTATACATCGGGATATGTGATA
AAAGAAAGCCGTCCTAATTCTTACACCCAAATCGAGATAATTGAAAATGCTGGTCATAAG
GTATTCTCAGATGATGAAGTGGAATTCAATCGACTGGTTAAAGAAGCTTGTAAAACTTTA
AAATCATCAAATTAA

>g8283.t2 Gene=g8283 Length=285
MNTELDHEQHTPIVLLHGYVSSLAFWMLNFDSFATDRPVYAVDLLGFGRSSRPNFSNDPI
EIEEQYVMFLEKWREIMKLEKMILLGHSFGGWIASLYALRYPERVQHLILADPWGYHAST
IHTHSIVRRMFLRIFAKIPPFSLVRAAGPFASSLLRTTRKDIVGKFESIMHERHKNAISE
YIYHCNSVKITGERAFHSLLHNGPWPKRPLVEVMKSLHVDVPITFVYGKKSWLDYTSGYV
IKESRPNSYTQIEIIENAGHKVFSDDEVEFNRLVKEACKTLKSSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8283.t2 Gene3D G3DSA:3.40.50.1820 - 3 279 5.7E-42
2 g8283.t2 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 6 280 4.4E-86
3 g8283.t2 PANTHER PTHR42886 RE40534P-RELATED 6 280 4.4E-86
5 g8283.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 36 51 3.2E-10
4 g8283.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 3.2E-10
6 g8283.t2 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.2E-10
1 g8283.t2 Pfam PF00561 alpha/beta hydrolase fold 12 265 3.8E-22
11 g8283.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
13 g8283.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
10 g8283.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 31 81 -
14 g8283.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 99 -
12 g8283.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 100 285 -
8 g8283.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 6 278 1.24E-42
7 g8283.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 30 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values