General information for g8283.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative (Lyso)-N-acylphosphatidylethanolamine lipase.
Parent gene
- The parent gene g8283 is located on chr_2: 29548259..29550786 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8283 | g8283.t4 | isoform | g8283.t4 | 29546872 | 29548259 |
| chr_2 | g8283 | g8283.t4 | exon | g8283.t4.exon1 | 29546872 | 29547318 |
| chr_2 | g8283 | g8283.t4 | cds | g8283.t4.CDS1 | 29547164 | 29547318 |
| chr_2 | g8283 | g8283.t4 | exon | g8283.t4.exon2 | 29547377 | 29547481 |
| chr_2 | g8283 | g8283.t4 | cds | g8283.t4.CDS2 | 29547377 | 29547481 |
| chr_2 | g8283 | g8283.t4 | exon | g8283.t4.exon3 | 29547535 | 29547612 |
| chr_2 | g8283 | g8283.t4 | cds | g8283.t4.CDS3 | 29547535 | 29547612 |
| chr_2 | g8283 | g8283.t4 | exon | g8283.t4.exon4 | 29547671 | 29548259 |
| chr_2 | g8283 | g8283.t4 | cds | g8283.t4.CDS4 | 29547671 | 29547671 |
| chr_2 | g8283 | g8283.t4 | TTS | g8283.t4 | 29548374 | 29548374 |
| chr_2 | g8283 | g8283.t4 | TSS | g8283.t4 | NA | NA |
Sequences
>g8283.t4 Gene=g8283 Length=1219
GCGATTCATAACATCAGTAAAGTCAGTTTTGAAATGGAATGTTCACTGTAAGAAGCAATT
AGAACACAACGAATCACTTATTCTTGCGAGTAAGTCAATAAACTTGATAGATATTTTCTC
TCGCTTATCAGTATTTATATATAAATTGGAAGAAGAATGTCTATGTAAACTGTGTCTACT
ATAATGTTATTTATACATATATTCTGCCACAGCTGTCAAAACACCTTATAAAAAATTTTT
TGTTGATATTGGAAATTGTGTCGGACCCAGTGATAGAATTTGGACACTCTCAATGAACAC
AGAACTTGATCATGAACAACATACTCCAATTGTACTCTTACATGGGTATGTTTCAAGTCT
TGCTTTCTGGATGCTCAATTTTGACTCTTTTGCTACTGATCGACCAGTATATGCTGTGGA
TTTACTCGGATTCGGCCGATCATCTAGGCCAAACTTTTCCAATGACCCAATTGAAATTGA
AGAGCAATATGTGATGTTTTTAGAAAAATGGCGCGAAATAATGAAATTAGAGAAGATGAT
TTTATTAGGTATGTCATTCTTTTGGAGGATGGATTGCATCACTATACGCATTGAGATATC
CAGAAAGAGTTCAACATTTGATTTTAGCTGATCCTTGGGGATATCATGCAAGCACAATCC
ATACACATTCAATTGTAAGACGTATGTTCCTTAGAATTTTTGCAAAAATTCCGCCCTTTA
GTTTAGTTAGAGCTGCTGGTCCTTTCGCATCTAGTTTATTACGAACAACCCGTAAAGATA
TTGTGGGGAAATTTGAAAGCATCATGCATGAACGACATAAGAATGCTATTTCAGAATATA
TCTATCATTGCAATAGTGTAAAAATAACAGGAGAAAGAGCATTTCACAGTCTTTTACATA
ATGGACCATGGCCAAAACGACCATTAGTTGAAGTAATGAAGAGCTTACATGTTGATGTTC
CAATCACTTTTGTATACGGTTTGTATCTAAACATCTCGTTTGCTATATGATAATTTTTAT
GATTATATATCATTTGATTATAGGAAAGAAATCATGGCTTGACTATACATCGGGATATGT
GATAAAAGAAAGCCGTCCTAATTCTTACACCCAAATCGAGATAATTGAAAATGCTGGTCA
TAAGGTATTCTCAGATGATGAAGTGGAATTCAATCGACTGGTTAAAGAAGCTTGTAAAAC
TTTAAAATCATCAAATTAA
>g8283.t4 Gene=g8283 Length=112
MNTELDHEQHTPIVLLHGYVSSLAFWMLNFDSFATDRPVYAVDLLGFGRSSRPNFSNDPI
EIEEQYVMFLEKWREIMKLEKMILLGMSFFWRMDCITIRIEISRKSSTFDFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8283.t4 | Gene3D | G3DSA:3.40.50.1820 | - | 4 | 89 | 1.6E-16 |
| 2 | g8283.t4 | PANTHER | PTHR42886:SF34 | 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 | 6 | 87 | 3.8E-29 |
| 3 | g8283.t4 | PANTHER | PTHR42886 | RE40534P-RELATED | 6 | 87 | 3.8E-29 |
| 1 | g8283.t4 | Pfam | PF00561 | alpha/beta hydrolase fold | 12 | 89 | 2.6E-6 |
| 5 | g8283.t4 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 6 | 89 | 5.12E-16 |
| 4 | g8283.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 30 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
